Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   XFHB_RS13300 Genome accession   NZ_CP009885
Coordinates   2705042..2707243 (+) Length   733 a.a.
NCBI ID   WP_088578485.1    Uniprot ID   -
Organism   Xylella fastidiosa strain Hib4     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2700042..2712243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFHB_RS13280 (XFHB_12470) - 2701391..2702752 (-) 1362 WP_046420849.1 MATE family efflux transporter -
  XFHB_RS13290 (XFHB_12480) - 2703074..2703589 (-) 516 WP_228762747.1 DUF3106 domain-containing protein -
  XFHB_RS13295 (XFHB_12485) - 2703640..2704605 (-) 966 WP_088578484.1 sigma-70 region 4 domain-containing protein -
  XFHB_RS13300 (XFHB_12490) priA 2705042..2707243 (+) 2202 WP_088578485.1 primosomal protein N' Machinery gene
  XFHB_RS13305 (XFHB_12495) rpoH 2708731..2709597 (-) 867 WP_031337152.1 RNA polymerase sigma factor RpoH -
  XFHB_RS13310 (XFHB_12500) ung 2709731..2710492 (-) 762 WP_010895106.1 uracil-DNA glycosylase -
  XFHB_RS13315 (XFHB_12505) - 2710498..2711346 (-) 849 WP_023907109.1 response regulator -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 81179.39 Da        Isoelectric Point: 9.4418

>NTDB_id=114285 XFHB_RS13300 WP_088578485.1 2705042..2707243(+) (priA) [Xylella fastidiosa strain Hib4]
MPPTILRVALPIPLPQCFDYLPPSDIPLPDSTLGCRVRVPFGKRELIGVVVELPSAEMSVPLREAFAWIDRIPILDGELA
QSLQWLSHYTHTPLGEILATALPGLLRHGKPLPETWTCWAWRLTETGRTAAPKLRRNSRSAQLAELLTTSDQTEDALNTR
MNHWRTVARNLTKRGYVERIKKPTTVSLIIQTTSNTVPVLNTEQQKAVETLNANVGFKTYLLDGVTGSGKTEVYLQAIAT
CLAASKQALVLVPEIGLTPQLLTNFHARLGIPVHALHSKLADNERARVWAAARCGEARLVLGTRSAVFTPLPHAGLIIVD
EEHDTSYKQQDGIRYNARDFALVRGKALNVPVILGSATPSLESLYNAHNGRYKHLRLTYRAGQAYAPQVRVLDVRKRPLK
DGLSPEVLTGINATLARDEQVLVFKNRRGYSPVLLCHDCGWTATCQQCSTSVHRTPMTVYTGGTYLQCHHCDARQPMPLS
CPDCGSTALQPQGIGTERLEARLIEAFPKHPVVRIDRNTTQHRDALKTQFTELGNAAGILVGTQILAKGHHLPRLTMVVV
VGIDEGLFSADFRATEKLSQQLIQVAGRAGRAKHAGEVWLQTHHPDHPLLQTLINGGYHTFANTELQQRQAAGLPPFAHL
ALLRAEAKDTTSTQQFLATVRKHIPIDNAVECYGPMSAPMPRRAGYERYQLLLSSSQRNTLHRTLNVLIPAIHALPEARR
VRWSLDVDPVDLY

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=114285 XFHB_RS13300 WP_088578485.1 2705042..2707243(+) (priA) [Xylella fastidiosa strain Hib4]
ATGCCCCCTACGATCCTACGTGTGGCGTTGCCAATCCCTTTACCGCAATGCTTCGACTATCTGCCGCCAAGCGACATACC
ACTCCCAGATTCAACCTTAGGCTGCCGCGTACGTGTGCCATTCGGGAAACGTGAGCTGATCGGTGTAGTGGTCGAACTTC
CATCAGCCGAAATGTCGGTACCATTACGCGAGGCATTCGCCTGGATTGACCGTATACCAATTCTAGATGGCGAGCTGGCA
CAATCGTTACAGTGGCTGTCACACTACACGCATACCCCACTCGGTGAGATATTAGCTACGGCTCTTCCCGGGCTGTTACG
TCATGGTAAACCCTTACCAGAGACCTGGACCTGCTGGGCTTGGCGTCTAACCGAAACCGGGCGCACTGCCGCTCCCAAGC
TGCGTCGCAACAGCCGCTCAGCACAACTGGCTGAATTACTCACCACCAGTGATCAAACGGAAGATGCACTTAACACTCGG
ATGAATCACTGGCGCACAGTTGCACGCAACCTAACCAAGCGTGGTTATGTCGAGCGCATCAAGAAACCTACAACCGTATC
TCTAATCATCCAGACCACCAGCAACACCGTACCTGTACTCAACACTGAACAACAGAAAGCAGTTGAGACACTAAACGCTA
ACGTAGGCTTCAAAACTTATCTGCTAGATGGAGTCACCGGCAGCGGTAAAACAGAAGTCTACCTACAAGCCATCGCTACC
TGCTTAGCTGCGAGTAAGCAAGCATTGGTCTTAGTCCCTGAGATCGGCTTGACACCTCAACTTCTAACCAACTTCCATGC
CCGCCTCGGAATACCCGTGCATGCCCTGCACTCCAAATTGGCAGACAACGAACGCGCCCGCGTGTGGGCGGCGGCCCGAT
GTGGCGAGGCACGACTGGTACTAGGAACTCGCTCAGCGGTGTTCACACCCCTACCTCATGCCGGACTAATTATAGTAGAT
GAGGAACACGACACGAGTTACAAGCAGCAAGACGGGATACGTTACAACGCGCGCGATTTCGCATTGGTGCGCGGCAAGGC
ACTGAACGTACCAGTCATCCTCGGGAGTGCCACTCCGTCACTGGAATCACTGTACAACGCGCATAACGGACGCTACAAGC
ACCTCCGCCTCACCTACCGTGCCGGTCAAGCGTATGCCCCTCAGGTGCGCGTACTAGACGTACGCAAAAGACCACTGAAA
GACGGCCTATCACCCGAGGTATTAACAGGCATTAACGCAACTTTAGCGCGTGATGAGCAGGTACTCGTATTCAAGAACCG
GCGCGGCTATTCACCAGTGTTGCTATGTCACGACTGCGGCTGGACCGCTACCTGTCAGCAGTGCAGCACATCAGTGCACC
GCACACCAATGACTGTATACACCGGCGGAACCTACTTACAGTGCCACCACTGCGACGCACGCCAGCCAATGCCACTATCA
TGCCCAGACTGCGGCAGTACAGCGCTACAGCCACAGGGAATAGGCACTGAACGCCTAGAAGCACGCCTGATTGAGGCTTT
CCCTAAACATCCTGTGGTGCGTATTGATCGCAACACAACCCAGCACCGCGACGCACTAAAAACCCAATTCACCGAACTCG
GCAATGCCGCTGGCATTTTAGTAGGCACCCAGATTCTAGCCAAAGGGCATCACCTACCACGCTTAACGATGGTCGTCGTC
GTTGGAATCGACGAAGGCCTATTCTCAGCCGACTTCCGCGCCACTGAAAAGCTCTCCCAGCAACTGATCCAAGTTGCTGG
CCGCGCTGGCCGTGCTAAACATGCCGGAGAAGTCTGGCTACAAACTCACCACCCTGATCACCCACTGTTGCAAACACTAA
TCAACGGCGGCTACCACACCTTTGCTAATACGGAGCTACAACAACGCCAAGCCGCTGGGTTGCCGCCATTCGCACACTTG
GCACTCCTGCGTGCTGAAGCGAAAGACACCACCTCAACACAACAATTTCTCGCCACGGTACGCAAACACATTCCAATCGA
CAATGCAGTCGAATGCTACGGCCCAATGTCGGCCCCCATGCCGCGTCGCGCCGGCTACGAGCGCTACCAATTATTGCTGT
CCAGCTCCCAACGTAACACACTACACCGCACACTCAATGTCTTGATACCAGCGATTCATGCACTGCCAGAAGCACGCCGA
GTCCGCTGGTCGTTAGACGTGGATCCAGTTGATCTTTACTAA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(636-729)

DEAD/DEAH box helicase (DEAD)

(204-362)

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-103)

Helicase conserved C-terminal domain (Helicase_C)

(505-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

40.595

100

0.409

Multiple sequence alignment