Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL26_RS06865 Genome accession   NZ_LS483521
Coordinates   1370988..1371713 (-) Length   241 a.a.
NCBI ID   WP_111693351.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8316     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1365988..1376713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL26_RS06830 (NCTC8316_01367) rnpM 1366022..1366318 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQL26_RS06835 (NCTC8316_01368) nusA 1366334..1367491 (-) 1158 WP_002988817.1 transcription termination factor NusA -
  DQL26_RS06840 (NCTC8316_01369) rimP 1367666..1368202 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQL26_RS06850 (NCTC8316_01371) trmB 1368461..1369096 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL26_RS06855 (NCTC8316_01372) ccrZ 1369096..1369887 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL26_RS06860 (NCTC8316_01373) - 1369951..1370985 (-) 1035 WP_010922583.1 ABC transporter permease -
  DQL26_RS06865 (NCTC8316_01374) pptA 1370988..1371713 (-) 726 WP_111693351.1 ABC transporter ATP-binding protein Regulator
  DQL26_RS06870 (NCTC8316_01375) - 1371785..1372204 (+) 420 WP_002983376.1 HIT family protein -
  DQL26_RS06875 (NCTC8316_01376) - 1372201..1372557 (+) 357 WP_030126323.1 hypothetical protein -
  DQL26_RS06880 (NCTC8316_01377) brpA 1372668..1373951 (-) 1284 WP_111693352.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL26_RS06885 (NCTC8316_01378) - 1373960..1374484 (-) 525 WP_063811834.1 GNAT family N-acetyltransferase -
  DQL26_RS06890 (NCTC8316_01379) tsaE 1374459..1374920 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL26_RS06895 (NCTC8316_01380) - 1375074..1376534 (-) 1461 WP_002988645.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26668.71 Da        Isoelectric Point: 4.5624

>NTDB_id=1142848 DQL26_RS06865 WP_111693351.1 1370988..1371713(-) (pptA) [Streptococcus pyogenes strain NCTC8316]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQSFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1142848 DQL26_RS06865 WP_111693351.1 1370988..1371713(-) (pptA) [Streptococcus pyogenes strain NCTC8316]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCCTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAATCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGATTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

99.17

0.722
  pptA Streptococcus thermophilus LMD-9

71.967

99.17

0.714

Multiple sequence alignment