Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DQL17_RS04535 Genome accession   NZ_LS483496
Coordinates   897180..899546 (+) Length   788 a.a.
NCBI ID   WP_111688936.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8455     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 892180..904546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS04510 (NCTC8455_00897) - 892526..893824 (-) 1299 WP_050949298.1 N-acetylmuramoyl-L-alanine amidase -
  DQL17_RS04515 (NCTC8455_00898) tsaE 893832..894308 (-) 477 WP_050949299.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL17_RS04520 (NCTC8455_00899) folK 894384..894866 (-) 483 WP_050949300.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DQL17_RS04525 (NCTC8455_00900) pcnB 894876..896234 (-) 1359 WP_050949301.1 polynucleotide adenylyltransferase PcnB -
  DQL17_RS04530 (NCTC8455_00901) dksA 896483..896920 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  DQL17_RS04535 (NCTC8455_00902) rec2 897180..899546 (+) 2367 WP_111688936.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQL17_RS04540 (NCTC8455_00903) msbA 899587..901350 (+) 1764 WP_111688937.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DQL17_RS04545 (NCTC8455_00904) lpxK 901423..902421 (+) 999 WP_048949883.1 tetraacyldisaccharide 4'-kinase -
  DQL17_RS04550 (NCTC8455_00905) kdsB 902492..903256 (+) 765 WP_048949884.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89386.73 Da        Isoelectric Point: 9.8515

>NTDB_id=1142732 DQL17_RS04535 WP_111688936.1 897180..899546(+) (rec2) [Haemophilus influenzae strain NCTC8455]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLQQAQRIT
AQKQMVAFEIQEILHQQDYQTLIATATLTDNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYLSK
GITAVGTVKSAAKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFMHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILNLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFLLVPLILFAVFTNGAVFSWQLANKLAEVITGLISVFQGNWLTVSFNLALFLTALCAGTFMLIIWRIYREPE
VSSSNWQIKRAKFFTLNLSKPLLKNERINVLICSFGIILMCFTILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWQGGSMAELEILPYLQRQGIVLEKLILSHDDNDHAGGASTILKAYPNLEFISPSQKNYGENHRTFCTAGRDWHWQG
LHFQILSPHTIVTRADNAHSCVILVDDGKHRVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVTERLQRYKSAVENTAVSGQVRVNFFKDGLEIQQARTEFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=1142732 DQL17_RS04535 WP_111688936.1 897180..899546(+) (rec2) [Haemophilus influenzae strain NCTC8455]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGCTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTACAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGGCTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGACGGATAACTTACAAGAGCAACGAATTTTTTTAAATTGGAAAGCAAAAGAGGTGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATCTTTCAAAA
GGAATTACGGCTGTTGGAACCGTAAAAAGTGCGGCGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATCGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATGCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCCTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCACTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGAATTTATTTCATTTGC
AATTTGGGTTATTGCTTTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATTGCTGTTCCACTTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGGTTTTTTC
TTGGCAACTTGCAAACAAGCTGGCTGAAGTGATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAACTTTTATGTTAATTATTTGGCGTATTTATCGAGAACCTGAG
GTTTCATCATCAAACTGGCAAATAAAACGAGCAAAATTTTTTACATTGAATCTCAGTAAACCCTTGCTAAAAAATGAACG
AATCAACGTTTTGATATGTTCTTTCGGCATTATTCTTATGTGTTTTACGATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCTACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCAAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGACAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAAGCGTATCCCAATCTGGAAT
TTATTAGCCCTTCACAAAAAAATTATGGGGAAAATCACCGCACTTTTTGTACAGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACACCATTGTGACACGAGCTGATAATGCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAACATCGAGTTTTGCTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGCAAAATTG
ATGTGTTGCAAGTGGGGCATCATGGAAGTAAGACATCGACAAGTGAATACTTACTTTCTCAGGTTAGACCAGATGTGGCG
ATTATATCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTCTGTTACGGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCAGGGCAAGTGCGGGTAAATTTTTTTAAAGACGGATTAGAAATCCAACAAGCACGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCGAAGGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Competence protein (Competence)

(204-474)

Domain of unknown function (DUF4131) (DUF4131)

(29-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

92.893

100

0.929

Multiple sequence alignment