Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DQL57_RS07480 Genome accession   NZ_LS483491
Coordinates   1577255..1577971 (+) Length   238 a.a.
NCBI ID   WP_059107652.1    Uniprot ID   -
Organism   Staphylococcus auricularis strain NCTC12101     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572255..1582971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL57_RS07450 - 1572893..1573521 (+) 629 Protein_1449 nitroreductase family protein -
  DQL57_RS07455 (NCTC12101_01574) - 1573684..1574469 (+) 786 WP_059107655.1 carbon-nitrogen family hydrolase -
  DQL57_RS07465 (NCTC12101_01576) - 1575212..1575787 (+) 576 WP_059107654.1 accessory gene regulator AgrB -
  DQL57_RS07470 (NCTC12101_01577) - 1575784..1575924 (+) 141 WP_083498188.1 cyclic lactone autoinducer peptide -
  DQL57_RS11080 (NCTC12101_01578) - 1576448..1577242 (+) 795 WP_338418858.1 GHKL domain-containing protein -
  DQL57_RS07480 (NCTC12101_01579) agrA 1577255..1577971 (+) 717 WP_059107652.1 LytTR family DNA-binding domain-containing protein Regulator
  DQL57_RS07485 (NCTC12101_01580) - 1578042..1579007 (-) 966 WP_059107651.1 carbohydrate kinase -
  DQL57_RS07490 (NCTC12101_01581) - 1579013..1580488 (-) 1476 WP_059107650.1 sucrose-6-phosphate hydrolase -
  DQL57_RS07495 (NCTC12101_01582) - 1580561..1581529 (-) 969 WP_059107649.1 LacI family DNA-binding transcriptional regulator -
  DQL57_RS07500 (NCTC12101_01583) - 1581731..1582372 (-) 642 WP_059107648.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27707.67 Da        Isoelectric Point: 4.9755

>NTDB_id=1142695 DQL57_RS07480 WP_059107652.1 1577255..1577971(+) (agrA) [Staphylococcus auricularis strain NCTC12101]
MKIYICEDDPKQLENLKTIISNYIMIEEKEMEIELATDDPEAILEHAKDTDEIGCYFLDIQLNAEMNGMKLATELRKVDP
VGNIIFVTSHSELTYLTFIYKVAAMDFIFKDDPEEIKTRVIDCLKTAETRLKLLSQESSVETIELKRGSNSLYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGSLKELSKIDQRFFRCHNSFVINRHNIESIDSKTRTVNFKNGECCYASVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1142695 DQL57_RS07480 WP_059107652.1 1577255..1577971(+) (agrA) [Staphylococcus auricularis strain NCTC12101]
GTGAAAATCTATATTTGTGAAGACGATCCAAAACAATTAGAAAATCTAAAAACGATCATTAGCAATTACATTATGATTGA
AGAAAAAGAAATGGAAATCGAACTTGCGACAGATGATCCTGAGGCTATACTTGAACACGCGAAGGATACGGATGAAATCG
GTTGTTATTTCTTAGACATTCAATTAAACGCTGAAATGAATGGTATGAAACTAGCTACAGAGTTAAGAAAAGTGGATCCT
GTTGGCAATATTATCTTTGTCACAAGTCACTCCGAACTTACATACCTGACGTTTATTTATAAAGTTGCTGCAATGGACTT
CATTTTCAAAGATGATCCAGAAGAAATTAAAACCCGCGTCATCGATTGTTTAAAAACAGCTGAAACACGTCTAAAATTAT
TATCACAGGAAAGCAGTGTTGAAACGATTGAACTTAAACGTGGTAGCAATTCGCTCTATGTACAATATGATGACGTGATG
TTTTTCGAATCATCTAGTAAATCCCATCGTCTTATTGCGCATTTAGATAACCGTCAAATCGAGTTCTACGGTAGTTTGAA
AGAATTAAGTAAAATCGATCAACGTTTCTTTAGATGTCATAATAGCTTTGTCATCAATCGTCATAACATTGAATCCATCG
ATTCTAAAACACGTACGGTCAACTTTAAAAACGGTGAATGTTGTTATGCTTCTGTACGCAATATCAAAAAAATTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(152-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

78.992

100

0.79

Multiple sequence alignment