Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | DQL14_RS01060 | Genome accession | NZ_LS483488 |
| Coordinates | 221421..221684 (+) | Length | 87 a.a. |
| NCBI ID | WP_108169542.1 | Uniprot ID | - |
| Organism | Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 216421..226684
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL14_RS01030 (NCTC11637_00212) | groES | 216715..217071 (-) | 357 | WP_000671927.1 | co-chaperone GroES | - |
| DQL14_RS01040 (NCTC11637_00213) | dnaG | 217349..219028 (+) | 1680 | WP_108169539.1 | DNA primase | - |
| DQL14_RS01045 (NCTC11637_00214) | - | 219025..220077 (+) | 1053 | WP_108169540.1 | MnmA/TRMU family protein | - |
| DQL14_RS01050 (NCTC11637_00215) | - | 220167..220994 (+) | 828 | WP_108169541.1 | DUF5718 family protein | - |
| DQL14_RS01055 (NCTC11637_00216) | comB2 | 221140..221421 (+) | 282 | WP_001272690.1 | TrbC/VirB2 family protein | Machinery gene |
| DQL14_RS01060 (NCTC11637_00217) | comB3 | 221421..221684 (+) | 264 | WP_108169542.1 | competence protein ComB | Machinery gene |
| DQL14_RS01065 (NCTC11637_00218) | comB4 | 221686..224049 (+) | 2364 | WP_108169543.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| DQL14_RS01075 (NCTC11637_00220) | - | 224368..225708 (+) | 1341 | WP_162296840.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10068.15 Da Isoelectric Point: 9.5290
>NTDB_id=1142654 DQL14_RS01060 WP_108169542.1 221421..221684(+) (comB3) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLAFFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLAFFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=1142654 DQL14_RS01060 WP_108169542.1 221421..221684(+) (comB3) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCGTTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCGTTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |