Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DQL18_RS05570 Genome accession   NZ_LS483486
Coordinates   1069098..1071464 (+) Length   788 a.a.
NCBI ID   WP_042593638.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12194     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1064098..1076464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL18_RS05545 (NCTC12194_01114) - 1064446..1065744 (-) 1299 WP_038440953.1 N-acetylmuramoyl-L-alanine amidase -
  DQL18_RS05550 (NCTC12194_01115) tsaE 1065752..1066228 (-) 477 WP_005693857.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL18_RS05555 (NCTC12194_01116) folK 1066304..1066786 (-) 483 WP_011271807.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DQL18_RS05560 (NCTC12194_01117) pcnB 1066795..1068153 (-) 1359 WP_042593665.1 polynucleotide adenylyltransferase PcnB -
  DQL18_RS05565 (NCTC12194_01118) dksA 1068401..1068838 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  DQL18_RS05570 (NCTC12194_01119) rec2 1069098..1071464 (+) 2367 WP_042593638.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQL18_RS05575 (NCTC12194_01120) msbA 1071505..1073268 (+) 1764 WP_021035541.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DQL18_RS05580 (NCTC12194_01121) lpxK 1073341..1074339 (+) 999 WP_105905293.1 tetraacyldisaccharide 4'-kinase -
  DQL18_RS05585 (NCTC12194_01122) kdsB 1074410..1075174 (+) 765 WP_012054788.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89563.84 Da        Isoelectric Point: 9.8878

>NTDB_id=1142635 DQL18_RS05570 WP_042593638.1 1069098..1071464(+) (rec2) [Haemophilus influenzae strain NCTC12194]
MKLNLIILAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLQQAQRIT
AQKQMVTFEIQEILHQQDYQTLIATATLTDNLQEQRIFLNWKAKEAPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGSVKSAAKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILNLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFFLVPLILFAVFTNGAVFSWQLANKLAEGITGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWRIYREPE
ASPSTWKIKRPRFFTLNLSKPLLKNDQNNVLRCSFGIILLCFTILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQARPDLA
IISSGRWNPWKFPHYSVTERLQRYKSAVENTAISGQVRVNFFQDRLEIQQARTEFSPWYVRVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=1142635 DQL18_RS05570 WP_042593638.1 1069098..1071464(+) (rec2) [Haemophilus influenzae strain NCTC12194]
ATGAAATTAAACTTAATAATTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTACAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGACTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGACGGATAACTTACAAGAGCAACGAATTTTTTTAAATTGGAAAGCAAAAGAGGCGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACAGCTGTTGGAAGCGTAAAAAGTGCGGCGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATTGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTAGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTACCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGAATTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGTTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCTGTTCCAATTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGGTTTTTTC
TTGGCAACTAGCAAATAAGCTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GCTTCACCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGATCA
GAACAACGTTTTGCGATGTTCTTTCGGCATTATCTTACTGTGTTTTACTATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGATGATAACGATCACGCAGGCGGTGCTTCGACAATTTTAAAGGCATATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTACTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGAAGTAAAACATCGACAAGTGAATATTTACTTTCCCAGGCTAGACCAGATTTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTCGGTTACGGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTATTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGTGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Domain of unknown function (DUF4131) (DUF4131)

(29-172)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.528

100

0.935

Multiple sequence alignment