Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQL18_RS02175 Genome accession   NZ_LS483486
Coordinates   429779..430432 (-) Length   217 a.a.
NCBI ID   WP_006995324.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12194     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 424779..435432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL18_RS02175 sxy/tfoX 429779..430432 (-) 654 WP_006995324.1 DNA transformation protein TfoX Regulator
  DQL18_RS02180 (NCTC12194_00437) recA 430805..431869 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  DQL18_RS02185 (NCTC12194_00438) recX 431949..432407 (+) 459 WP_005651075.1 recombination regulator RecX -
  DQL18_RS02190 (NCTC12194_00439) crcB 432404..432790 (-) 387 WP_005665585.1 fluoride efflux transporter CrcB -
  DQL18_RS02195 (NCTC12194_00440) - 432790..433608 (-) 819 WP_105905357.1 Cof-type HAD-IIB family hydrolase -
  DQL18_RS02200 (NCTC12194_00441) - 434011..435015 (+) 1005 WP_038439482.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24987.35 Da        Isoelectric Point: 10.0171

>NTDB_id=1142616 DQL18_RS02175 WP_006995324.1 429779..430432(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC12194]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1142616 DQL18_RS02175 WP_006995324.1 429779..430432(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC12194]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTCTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGTTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment