Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   DQL18_RS01910 Genome accession   NZ_LS483486
Coordinates   385023..385319 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain NCTC12194     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 380023..390319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL18_RS01900 (NCTC12194_00382) - 381405..384587 (+) 3183 WP_231901886.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DQL18_RS01905 (NCTC12194_00383) - 384848..385030 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  DQL18_RS01910 (NCTC12194_00384) HI0659 385023..385319 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  DQL18_RS01915 (NCTC12194_00385) - 385480..387396 (+) 1917 WP_105905590.1 ABC transporter ATP-binding protein -
  DQL18_RS01920 (NCTC12194_00386) - 387406..387942 (+) 537 WP_038439524.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  DQL18_RS01925 (NCTC12194_00387) - 387958..388509 (+) 552 WP_038439523.1 Sua5/YciO/YrdC/YwlC family protein -
  DQL18_RS01930 (NCTC12194_00388) aroE 388513..389319 (+) 807 WP_105905591.1 shikimate dehydrogenase -
  DQL18_RS01935 (NCTC12194_00389) - 389331..390083 (+) 753 WP_011272149.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=1142615 DQL18_RS01910 WP_005650837.1 385023..385319(+) (HI0659) [Haemophilus influenzae strain NCTC12194]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1142615 DQL18_RS01910 WP_005650837.1 385023..385319(+) (HI0659) [Haemophilus influenzae strain NCTC12194]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTACGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment