Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DQL22_RS06930 Genome accession   NZ_LS483485
Coordinates   1385765..1388194 (-) Length   809 a.a.
NCBI ID   WP_111300117.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain NCTC11096     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380765..1393194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL22_RS06910 (NCTC11096_01393) kdsB 1381925..1382698 (-) 774 WP_005704168.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DQL22_RS06915 (NCTC11096_01394) - 1382700..1382879 (-) 180 WP_050694206.1 Trm112 family protein -
  DQL22_RS06920 (NCTC11096_01395) lpxK 1382976..1383953 (-) 978 WP_111300121.1 tetraacyldisaccharide 4'-kinase -
  DQL22_RS06925 (NCTC11096_01396) msbA 1383972..1385720 (-) 1749 WP_111300119.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DQL22_RS06930 (NCTC11096_01397) rec2 1385765..1388194 (-) 2430 WP_111300117.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQL22_RS06935 (NCTC11096_01398) dksA 1388488..1388925 (+) 438 WP_005556693.1 RNA polymerase-binding protein DksA -
  DQL22_RS06940 (NCTC11096_01399) pcnB 1389199..1390497 (+) 1299 WP_414973501.1 polynucleotide adenylyltransferase PcnB -
  DQL22_RS06945 (NCTC11096_01400) folK 1390490..1390987 (+) 498 WP_109843175.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DQL22_RS06955 (NCTC11096_01401) - 1391455..1392813 (-) 1359 WP_111300115.1 MFS transporter -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 91830.77 Da        Isoelectric Point: 9.7406

>NTDB_id=1142602 DQL22_RS06930 WP_111300117.1 1385765..1388194(-) (rec2) [Aggregatibacter aphrophilus strain NCTC11096]
MNISLDKFAGTLIFSGLTLLFLPDKWLLSWQVALYIFLPLLFITLLCYCLKLTKLLTLLTYLLLLLALLVYVHFPALSML
KQADNIANLPKILHTEFTVQEVLNQQDFQTVVIAAKLAEDLPEQRIYAQWKTPQIVQIGERYKGDLRLRPISSRLNFNGF
DRQQWYFGKHISAWASVQSAVKIENVFSWRQTALNNALKQTENLSQQGLLLALSFGERAWLDNETWQIYQKTNTAHLIAI
SGLHIGLAMLLGYGLARLLQFFLPTRYLTPTLPILCGLLCALLYSQLAGMAIPTLRAMVALAILYAIQGLRLYWTPWRLL
WRVLALLILIDPLMLLSTSFWLSVSAVISLMIWYQFFPLSLLQWRQSSLTHSPWHKVRWIFSLFHLQLGLLWLFTPIQLF
FFNGLSLNGFIANLIAVPIYSFLLVPLVLFAVFTQGTLYSWQAANNLSEKITALLAYGQDGWLAVSLQQSLWLTLLLTIA
FLSVLHFVYKAPKPIVSPIELAKQSRNKGFHLNPARKLDLGLPIKAYAIGGGLVVFCITSLIYLSISRPHWQLETLDVGQ
GLATLIVKNGKGVLYDTGPSWNNGSMARLEILPYLQREGIELDWLIISHDDNDHAGGAKDILAAYPTVKFISPSDKIYGE
KNDRKIDRTLCQTGEKWHWQGLSFSVLSPDNIVPRAENKDSCTLLLSDGQHQILLTGDADLGVEYKILPKLGKIDVLQVG
HHGSKTSTGEALVQQTEPKIALISSGRWNPWHFPHKDVVARLRRQNTQIYNTAEHGQIRLLFQDNKIKIQTARAEFSPWY
RRLIGLQTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=1142602 DQL22_RS06930 WP_111300117.1 1385765..1388194(-) (rec2) [Aggregatibacter aphrophilus strain NCTC11096]
GTGAATATTTCGTTAGATAAATTTGCCGGCACACTGATTTTCAGTGGGCTAACACTATTATTTTTGCCCGATAAATGGCT
TTTATCGTGGCAGGTTGCATTGTATATTTTCCTCCCGTTACTATTTATAACGTTACTTTGTTACTGCTTAAAATTAACCA
AGTTGTTAACGCTACTCACCTATTTATTGCTGCTTCTTGCCCTGCTGGTTTATGTGCATTTCCCTGCCCTGTCAATGCTC
AAACAAGCGGACAACATTGCCAATTTGCCGAAAATCCTTCACACCGAATTCACCGTACAAGAAGTATTGAACCAACAAGA
TTTTCAAACTGTAGTCATTGCCGCCAAACTTGCCGAAGACTTACCAGAACAACGTATTTATGCCCAATGGAAAACGCCGC
AAATCGTGCAAATCGGCGAACGTTATAAGGGCGATTTACGTCTACGCCCAATATCGTCCCGTTTAAACTTTAACGGCTTC
GACCGCCAACAATGGTATTTCGGCAAACATATTAGCGCATGGGCAAGCGTGCAAAGTGCGGTCAAAATAGAAAACGTTTT
TTCGTGGCGACAAACTGCTCTCAATAACGCTCTAAAACAAACGGAAAATCTATCCCAACAAGGTCTACTATTAGCCCTTA
GTTTTGGCGAACGTGCATGGTTAGACAACGAAACTTGGCAAATTTATCAAAAAACTAATACGGCGCATTTAATCGCCATT
TCCGGCTTGCATATCGGCCTTGCCATGTTGCTAGGATATGGCCTGGCACGCCTATTGCAATTTTTTCTGCCAACCCGCTA
TCTCACGCCGACATTGCCGATACTATGCGGTTTGCTATGTGCCTTGCTTTATAGTCAGCTGGCCGGTATGGCTATTCCCA
CCCTGCGCGCCATGGTTGCCCTCGCTATTCTCTATGCCATTCAAGGCCTAAGGCTATACTGGACGCCATGGCGTTTATTG
TGGCGGGTGTTGGCATTATTGATTTTGATCGATCCGCTTATGTTGCTTTCCACCAGTTTCTGGCTGTCCGTCAGCGCCGT
CATAAGTTTGATGATTTGGTATCAATTTTTTCCGCTATCGCTATTACAATGGCGCCAATCATCCCTTACCCATTCACCAT
GGCACAAAGTGCGGTGGATTTTTTCGCTGTTTCATCTGCAATTGGGGCTGTTATGGTTGTTTACCCCAATTCAACTTTTC
TTTTTTAACGGACTCTCTTTAAATGGCTTTATAGCCAATTTAATCGCCGTGCCCATATACAGCTTTTTGTTGGTTCCCTT
AGTATTGTTTGCCGTATTCACTCAAGGCACCTTGTATTCATGGCAGGCCGCCAATAATTTATCGGAAAAAATCACCGCAC
TTTTGGCTTATGGGCAAGACGGCTGGCTTGCGGTTTCACTTCAACAAAGTTTATGGCTAACGCTTTTGCTCACGATTGCG
TTTTTAAGCGTATTACATTTTGTTTATAAAGCCCCGAAACCTATCGTATCCCCCATCGAATTAGCCAAACAATCCCGTAA
TAAAGGATTTCACTTAAACCCCGCGCGTAAACTTGATTTAGGGTTACCAATCAAGGCGTATGCCATCGGCGGCGGATTAG
TGGTGTTTTGCATTACTTCATTGATTTACCTGTCAATTTCACGCCCTCATTGGCAATTAGAAACCTTAGATGTAGGGCAA
GGGCTCGCCACATTAATCGTTAAAAATGGCAAAGGCGTGCTCTATGACACCGGCCCAAGTTGGAACAACGGCAGCATGGC
AAGATTAGAAATTTTGCCTTATTTACAGCGGGAAGGTATTGAACTTGATTGGTTGATCATCAGCCATGATGACAACGATC
ACGCCGGCGGAGCAAAAGATATTTTAGCGGCATACCCGACAGTGAAATTCATTAGCCCGTCAGACAAAATCTATGGGGAA
AAAAACGATCGCAAAATCGACCGCACTTTGTGCCAAACCGGCGAAAAATGGCATTGGCAAGGATTAAGTTTCTCCGTACT
ATCCCCCGATAATATCGTGCCAAGAGCGGAAAATAAGGATTCTTGCACACTATTACTAAGTGATGGACAACATCAAATTT
TACTCACAGGTGACGCGGATCTTGGGGTGGAATATAAGATCTTGCCAAAACTTGGGAAGATCGATGTGTTACAGGTGGGA
CACCATGGCAGTAAAACCTCGACCGGTGAAGCATTGGTGCAACAAACGGAGCCTAAGATCGCCCTGATTTCCAGCGGACG
TTGGAATCCTTGGCATTTTCCCCACAAAGACGTGGTTGCCCGTTTAAGACGACAAAATACACAAATTTATAACACGGCGG
AACACGGACAAATCCGCTTATTATTTCAAGATAACAAAATAAAAATCCAAACTGCGCGGGCAGAATTTTCACCGTGGTAT
CGCAGATTAATTGGCTTACAGACGAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-485)

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

53.205

96.415

0.513

Multiple sequence alignment