Detailed information NTG0114257

Bioinformatically predicted

Overview

• Name: comH
• Type: Machinery gene
• Locus tag: HPOKI828_RS07345
• Genome accession: NZ_CP006826
• Coordinates: 1520834..1522273 (-)
• Length: 479 a.a.
• NCBI ID: WP_025223351.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki828
• Function: import of DNA into the periplasm (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1515834..1527273

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI828_RS07320 (HPOKI828_07635)	recG	1516974..1518839 (-)	1866	WP_025223347.1	ATP-dependent DNA helicase RecG	-
HPOKI828_RS07325 (HPOKI828_07640)	-	1518921..1519268 (+)	348	WP_025223348.1	hypothetical protein	-
HPOKI828_RS07330 (HPOKI828_07645)	-	1519272..1519907 (+)	636	WP_025223349.1	outer membrane protein	-
HPOKI828_RS07335 (HPOKI828_07650)	-	1519904..1520656 (-)	753	WP_025223350.1	exodeoxyribonuclease III	-
HPOKI828_RS07345 (HPOKI828_07660)	comH	1520834..1522273 (-)	1440	WP_025223351.1	hypothetical protein	Machinery gene
HPOKI828_RS07350 (HPOKI828_07665)	dnaA	1522494..1523861 (-)	1368	WP_025223352.1	chromosomal replication initiator protein DnaA	-
HPOKI828_RS07355 (HPOKI828_07670)	-	1524015..1524551 (+)	537	WP_025223353.1	purine-nucleoside phosphorylase	-
HPOKI828_RS07360 (HPOKI828_07675)	-	1524598..1524837 (+)	240	WP_000461845.1	DUF2443 domain-containing protein	-
HPOKI828_RS07365 (HPOKI828_07680)	glmS	1524838..1526631 (+)	1794	WP_025223354.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 54999.02 Da
• Isoelectric Point: 6.5117

>NTDB_id=114257 HPOKI828_RS07345 WP_025223351.1 1520834..1522273(-) (comH) [Helicobacter pylori oki828]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPNKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNAPIQKPQNKPTSSQQSLQNFSYPESKLGSKNPKNSLLQPL
AIPNKISPTNEVQTPTNDTKPPLKHSLEDQENNLFVAPPTEKTLPNNNPNADINEHNESNENRDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARTRKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
DLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide

• Length: 1440 bp

>NTDB_id=114257 HPOKI828_RS07345 WP_025223351.1 1520834..1522273(-) (comH) [Helicobacter pylori oki828]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTTTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGAATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCATTCCTAATAAAATAAGCCCCACTAATGAAGTTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTT
AGAAGATCAAGAAAACAACCTTTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAACAACCCTAACGCTGATATTA
ATGAACACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATATCAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGAGCCAGAACACGAAAAGACGGCACGACTAGGCAATGCTACCTAATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AGATAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
GATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAACAACCACGAG
CCAAAAGCACGCCCTTGAGTATTGAAAACTCTAAAGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comH	Helicobacter pylori 26695	93.528	100	0.935