Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | DQL46_RS06665 | Genome accession | NZ_LS483482 |
| Coordinates | 1387230..1388204 (+) | Length | 324 a.a. |
| NCBI ID | WP_080606567.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain NCTC12217 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1382230..1393204
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL46_RS06630 (NCTC12217_01354) | rpmG | 1382654..1382803 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| DQL46_RS06635 (NCTC12217_01355) | - | 1383053..1383589 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| DQL46_RS06640 (NCTC12217_01356) | - | 1383606..1385063 (+) | 1458 | WP_002478127.1 | rhomboid family protein | - |
| DQL46_RS06645 (NCTC12217_01357) | - | 1385047..1385250 (+) | 204 | WP_070648475.1 | YqgQ family protein | - |
| DQL46_RS06650 (NCTC12217_01358) | - | 1385247..1386233 (+) | 987 | WP_070648477.1 | ROK family glucokinase | - |
| DQL46_RS06655 (NCTC12217_01359) | - | 1386233..1386556 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| DQL46_RS06660 (NCTC12217_01360) | - | 1386560..1387183 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| DQL46_RS06665 (NCTC12217_01361) | comGA | 1387230..1388204 (+) | 975 | WP_080606567.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL46_RS06670 (NCTC12217_01362) | comGB | 1388176..1389240 (+) | 1065 | WP_070648479.1 | competence type IV pilus assembly protein ComGB | - |
| DQL46_RS06675 (NCTC12217_01363) | comGC | 1389255..1389569 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL46_RS06680 | comGD | 1389547..1389996 (+) | 450 | WP_037540764.1 | competence type IV pilus minor pilin ComGD | - |
| DQL46_RS06685 (NCTC12217_01364) | - | 1389983..1390276 (+) | 294 | WP_070648483.1 | hypothetical protein | - |
| DQL46_RS06690 (NCTC12217_01365) | - | 1390338..1390697 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| DQL46_RS06700 | - | 1390851..1391369 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| DQL46_RS06705 (NCTC12217_01368) | gcvT | 1391539..1392630 (+) | 1092 | WP_037544364.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36904.75 Da Isoelectric Point: 7.8894
>NTDB_id=1142520 DQL46_RS06665 WP_080606567.1 1387230..1388204(+) (comGA) [Staphylococcus lugdunensis strain NCTC12217]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQKLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQKLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=1142520 DQL46_RS06665 WP_080606567.1 1387230..1388204(+) (comGA) [Staphylococcus lugdunensis strain NCTC12217]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAAACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAAACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.898 |
99.691 |
0.707 |
| comGA | Staphylococcus aureus N315 |
70.898 |
99.691 |
0.707 |