Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   DQL46_RS01610 Genome accession   NZ_LS483482
Coordinates   344927..345835 (+) Length   302 a.a.
NCBI ID   WP_080606487.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain NCTC12217     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 339927..350835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL46_RS01590 (NCTC12217_00321) wecB 340944..342083 (+) 1140 WP_002478510.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  DQL46_RS01595 (NCTC12217_00322) - 342269..343717 (-) 1449 WP_070815487.1 alkaline phosphatase -
  DQL46_RS12380 - 343936..344040 (+) 105 Protein_316 hypothetical protein -
  DQL46_RS01605 (NCTC12217_00324) braR 344256..344921 (+) 666 WP_070647759.1 response regulator transcription factor Regulator
  DQL46_RS01610 (NCTC12217_00325) braS 344927..345835 (+) 909 WP_080606487.1 sensor histidine kinase Regulator
  DQL46_RS01615 (NCTC12217_00326) - 345941..346690 (+) 750 WP_002478514.1 ABC transporter ATP-binding protein -
  DQL46_RS01620 (NCTC12217_00327) - 346713..348674 (+) 1962 WP_225306480.1 FtsX-like permease family protein -
  DQL46_RS01625 (NCTC12217_00328) - 348717..349166 (+) 450 WP_002492528.1 hypothetical protein -
  DQL46_RS01630 (NCTC12217_00329) - 349253..349732 (+) 480 WP_070647761.1 DUF4064 domain-containing protein -
  DQL46_RS01635 (NCTC12217_00330) - 350005..350679 (+) 675 WP_002478518.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 35252.83 Da        Isoelectric Point: 6.9196

>NTDB_id=1142505 DQL46_RS01610 WP_080606487.1 344927..345835(+) (braS) [Staphylococcus lugdunensis strain NCTC12217]
MTTFFDTIKRELIITAMALVVFLVIFFVFNLPYYAYFLGSGIMLFIMVIYWFIALSEFKKQQRLTSQLKVLEQEVQQLRS
KQTQYQNDIESYFLTWVHQIKTPITASKLLLERNEDNVVNRVRQEIIQIDNYTSLALSYLKLMNHETDMSFTKVTVNELV
KPLIMKYSIQFIDQHTRIHYDCSDEEVLTDVQWASIMIEQILNNALKYARGKDIWLTFDKDINVLSIKDNGVGISTADLP
KIFDKGYSGYNGRLNEQSTGIGLFIVKHISNHIHHQVEVDSKLGQGTTFKIYFPKVDKMNEL

Nucleotide


Download         Length: 909 bp        

>NTDB_id=1142505 DQL46_RS01610 WP_080606487.1 344927..345835(+) (braS) [Staphylococcus lugdunensis strain NCTC12217]
ATGACAACGTTCTTTGACACAATTAAGCGTGAACTGATCATCACCGCAATGGCATTAGTTGTTTTTTTAGTAATCTTTTT
TGTCTTTAATTTGCCCTACTATGCCTACTTTTTAGGAAGTGGCATTATGTTATTTATCATGGTTATTTATTGGTTTATCG
CATTGAGCGAGTTTAAAAAACAACAACGATTGACATCTCAACTTAAAGTGTTAGAACAAGAAGTTCAACAATTAAGAAGC
AAGCAAACGCAATACCAAAATGACATCGAAAGCTATTTTCTTACTTGGGTACATCAAATTAAAACACCGATCACTGCCTC
CAAACTATTACTCGAACGTAATGAAGACAATGTTGTTAACCGTGTCCGACAAGAAATAATTCAAATTGATAATTACACTA
GTTTAGCTTTAAGCTATTTAAAATTAATGAATCATGAAACTGACATGAGCTTTACTAAAGTAACTGTCAATGAATTGGTT
AAGCCATTAATAATGAAATATTCAATACAATTTATCGATCAACATACACGTATACATTATGATTGCTCAGATGAAGAAGT
ATTGACAGATGTGCAATGGGCTTCCATTATGATAGAGCAAATTTTGAATAATGCACTAAAATATGCTCGTGGTAAAGATA
TTTGGTTAACTTTTGATAAAGATATAAACGTACTGTCTATCAAAGATAATGGTGTGGGTATTAGTACTGCTGATTTACCG
AAAATTTTTGATAAAGGTTATTCTGGTTATAATGGTCGTTTAAATGAGCAATCAACTGGTATTGGATTGTTTATAGTAAA
ACATATATCGAATCATATTCATCATCAAGTAGAAGTAGATTCTAAGCTAGGTCAAGGTACGACATTTAAGATTTATTTTC
CTAAGGTAGATAAAATGAATGAACTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(196-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

58.904

96.689

0.57

Multiple sequence alignment