Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQL19_RS02225 Genome accession   NZ_LS483480
Coordinates   432188..432841 (-) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC13377     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 427188..437841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS02225 sxy/tfoX 432188..432841 (-) 654 WP_005692773.1 DNA transformation protein TfoX Regulator
  DQL19_RS02230 (NCTC13377_00437) recA 433161..434225 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  DQL19_RS02235 (NCTC13377_00438) recX 434305..434763 (+) 459 WP_041175045.1 recombination regulator RecX -
  DQL19_RS02240 (NCTC13377_00439) crcB 434760..435146 (-) 387 WP_005692779.1 fluoride efflux transporter CrcB -
  DQL19_RS02245 (NCTC13377_00440) - 435146..435964 (-) 819 WP_077643670.1 Cof-type HAD-IIB family hydrolase -
  DQL19_RS02250 (NCTC13377_00441) - 436361..437365 (+) 1005 WP_048954607.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=1142477 DQL19_RS02225 WP_005692773.1 432188..432841(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC13377]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1142477 DQL19_RS02225 WP_005692773.1 432188..432841(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC13377]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGCGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment