Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | DQN84_RS08380 | Genome accession | NZ_LS483476 |
| Coordinates | 1741196..1742254 (+) | Length | 352 a.a. |
| NCBI ID | WP_066137453.1 | Uniprot ID | - |
| Organism | Lederbergia lenta strain NCTC4824 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1736196..1747254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN84_RS08350 (NCTC4824_01719) | - | 1736271..1737404 (+) | 1134 | WP_066137448.1 | hypothetical protein | - |
| DQN84_RS08355 (NCTC4824_01721) | - | 1737455..1737631 (-) | 177 | WP_082788578.1 | DUF2759 domain-containing protein | - |
| DQN84_RS08360 (NCTC4824_01722) | - | 1737861..1738487 (+) | 627 | WP_066137449.1 | MBL fold metallo-hydrolase | - |
| DQN84_RS08365 (NCTC4824_01723) | - | 1738664..1739482 (-) | 819 | WP_066137450.1 | ABC transporter permease | - |
| DQN84_RS08370 (NCTC4824_01724) | - | 1739479..1740423 (-) | 945 | WP_066137451.1 | ABC transporter ATP-binding protein | - |
| DQN84_RS08375 (NCTC4824_01725) | - | 1740689..1740931 (-) | 243 | WP_066137452.1 | DUF2626 domain-containing protein | - |
| DQN84_RS08380 (NCTC4824_01726) | comGA | 1741196..1742254 (+) | 1059 | WP_066137453.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQN84_RS08385 (NCTC4824_01727) | comGB | 1742256..1743269 (+) | 1014 | WP_145981924.1 | competence type IV pilus assembly protein ComGB | - |
| DQN84_RS08390 (NCTC4824_01728) | comGC | 1743285..1743599 (+) | 315 | WP_066137455.1 | competence type IV pilus major pilin ComGC | - |
| DQN84_RS08395 (NCTC4824_01729) | comGD | 1743610..1744065 (+) | 456 | WP_066137456.1 | competence type IV pilus minor pilin ComGD | - |
| DQN84_RS08400 (NCTC4824_01730) | - | 1744052..1744363 (+) | 312 | WP_066137457.1 | type II secretion system protein | - |
| DQN84_RS08405 (NCTC4824_01731) | comGF | 1744308..1744790 (+) | 483 | WP_145981925.1 | competence type IV pilus minor pilin ComGF | - |
| DQN84_RS08410 (NCTC4824_01732) | - | 1745035..1745538 (+) | 504 | WP_066137459.1 | shikimate kinase | - |
| DQN84_RS08415 (NCTC4824_01733) | - | 1745579..1745755 (+) | 177 | WP_082788580.1 | YqzE family protein | - |
| DQN84_RS08420 (NCTC4824_01734) | - | 1745792..1746586 (-) | 795 | WP_066137460.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 39263.94 Da Isoelectric Point: 8.8213
>NTDB_id=1142437 DQN84_RS08380 WP_066137453.1 1741196..1742254(+) (comGA) [Lederbergia lenta strain NCTC4824]
MSIEKIADLLLKQAIQLTATDIHITPRKHNYHIQFRLHGLLTTIQSIPFQAGERLISHLKFMSSIDISEKRKPQSGSFEL
NLNNQLIALRISTLPTTLAKESLVIRILPQDHSFILEKMSLFPSTSPILKSFMLHAHGMLIFTGPTGSGKSTTMYAVAEH
CAGTLNRRVVTLEDPVEKQSDMLLQVQLNDKAGITYSTGLKAILRHDPDVIIIGEIRDAETAHIAIRAALTGHLVLTSLH
TRDAKGAIYRLLEFGVKLQDIEQTLIGIMAQRLIALLCPLCGESCSKFCTRRVAKRTGVYEILYGQALVGALEESKGGKE
VYHYPLIKDLIRKGIALGYVPVEEYKHWVLEE
MSIEKIADLLLKQAIQLTATDIHITPRKHNYHIQFRLHGLLTTIQSIPFQAGERLISHLKFMSSIDISEKRKPQSGSFEL
NLNNQLIALRISTLPTTLAKESLVIRILPQDHSFILEKMSLFPSTSPILKSFMLHAHGMLIFTGPTGSGKSTTMYAVAEH
CAGTLNRRVVTLEDPVEKQSDMLLQVQLNDKAGITYSTGLKAILRHDPDVIIIGEIRDAETAHIAIRAALTGHLVLTSLH
TRDAKGAIYRLLEFGVKLQDIEQTLIGIMAQRLIALLCPLCGESCSKFCTRRVAKRTGVYEILYGQALVGALEESKGGKE
VYHYPLIKDLIRKGIALGYVPVEEYKHWVLEE
Nucleotide
Download Length: 1059 bp
>NTDB_id=1142437 DQN84_RS08380 WP_066137453.1 1741196..1742254(+) (comGA) [Lederbergia lenta strain NCTC4824]
ATGTCTATTGAAAAAATAGCAGATCTCCTTCTTAAACAAGCAATACAACTCACGGCAACAGATATCCATATTACTCCTCG
GAAACATAACTATCACATTCAGTTTAGACTCCATGGTTTACTAACGACAATTCAATCCATTCCTTTCCAAGCAGGGGAGA
GACTAATTTCACATTTGAAGTTTATGTCATCAATCGACATAAGTGAAAAAAGAAAGCCTCAAAGTGGATCCTTCGAACTA
AATCTCAATAATCAGTTAATCGCACTAAGAATTTCTACACTTCCAACTACATTGGCAAAAGAAAGTCTTGTCATTCGTAT
CTTGCCCCAAGATCACTCCTTTATCCTAGAAAAGATGTCTCTATTTCCGTCTACTTCTCCTATACTTAAATCCTTTATGT
TACACGCTCATGGAATGCTAATTTTCACAGGTCCAACCGGCAGCGGTAAATCGACGACAATGTACGCAGTTGCAGAGCAT
TGCGCAGGTACGTTAAATCGCCGGGTAGTAACGTTAGAAGACCCTGTAGAGAAACAAAGTGATATGTTATTACAGGTACA
GTTAAATGATAAAGCTGGTATTACCTACAGTACTGGGTTAAAAGCAATCTTACGGCATGACCCAGATGTTATTATCATCG
GAGAGATTCGTGATGCGGAAACTGCTCATATTGCTATAAGAGCTGCATTAACCGGACATCTCGTATTGACAAGCTTACAC
ACCCGTGATGCCAAAGGAGCAATCTATCGGTTACTTGAATTTGGTGTAAAACTGCAAGATATTGAACAAACCTTAATTGG
AATTATGGCACAGCGTTTAATAGCGCTTTTATGCCCTTTATGTGGGGAAAGCTGTTCGAAATTTTGTACGCGTAGGGTAG
CGAAAAGAACTGGTGTGTATGAAATTCTTTATGGGCAAGCATTAGTAGGTGCACTAGAAGAATCGAAGGGAGGAAAAGAG
GTATATCATTATCCATTGATCAAAGATTTGATTAGAAAGGGGATTGCGCTTGGCTACGTTCCTGTCGAAGAATATAAACA
CTGGGTACTTGAAGAATAG
ATGTCTATTGAAAAAATAGCAGATCTCCTTCTTAAACAAGCAATACAACTCACGGCAACAGATATCCATATTACTCCTCG
GAAACATAACTATCACATTCAGTTTAGACTCCATGGTTTACTAACGACAATTCAATCCATTCCTTTCCAAGCAGGGGAGA
GACTAATTTCACATTTGAAGTTTATGTCATCAATCGACATAAGTGAAAAAAGAAAGCCTCAAAGTGGATCCTTCGAACTA
AATCTCAATAATCAGTTAATCGCACTAAGAATTTCTACACTTCCAACTACATTGGCAAAAGAAAGTCTTGTCATTCGTAT
CTTGCCCCAAGATCACTCCTTTATCCTAGAAAAGATGTCTCTATTTCCGTCTACTTCTCCTATACTTAAATCCTTTATGT
TACACGCTCATGGAATGCTAATTTTCACAGGTCCAACCGGCAGCGGTAAATCGACGACAATGTACGCAGTTGCAGAGCAT
TGCGCAGGTACGTTAAATCGCCGGGTAGTAACGTTAGAAGACCCTGTAGAGAAACAAAGTGATATGTTATTACAGGTACA
GTTAAATGATAAAGCTGGTATTACCTACAGTACTGGGTTAAAAGCAATCTTACGGCATGACCCAGATGTTATTATCATCG
GAGAGATTCGTGATGCGGAAACTGCTCATATTGCTATAAGAGCTGCATTAACCGGACATCTCGTATTGACAAGCTTACAC
ACCCGTGATGCCAAAGGAGCAATCTATCGGTTACTTGAATTTGGTGTAAAACTGCAAGATATTGAACAAACCTTAATTGG
AATTATGGCACAGCGTTTAATAGCGCTTTTATGCCCTTTATGTGGGGAAAGCTGTTCGAAATTTTGTACGCGTAGGGTAG
CGAAAAGAACTGGTGTGTATGAAATTCTTTATGGGCAAGCATTAGTAGGTGCACTAGAAGAATCGAAGGGAGGAAAAGAG
GTATATCATTATCCATTGATCAAAGATTTGATTAGAAAGGGGATTGCGCTTGGCTACGTTCCTGTCGAAGAATATAAACA
CTGGGTACTTGAAGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
55.241 |
100 |
0.554 |