Detailed information NTG1142434

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: DQN84_RS07770
• Genome accession: NZ_LS483476
• Coordinates: 1628838..1631237 (+)
• Length: 799 a.a.
• NCBI ID: WP_066137283.1
• Uniprot ID: A0A2X4VUW0
• Organism: Lederbergia lenta strain NCTC4824
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1623838..1636237

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN84_RS07740 (NCTC4824_01591)	-	1624056..1624715 (+)	660	WP_066137272.1	YczE/YyaS/YitT family protein	-
DQN84_RS07745 (NCTC4824_01592)	cymR	1624712..1625131 (+)	420	WP_066137274.1	cysteine metabolism transcriptional regulator CymR	-
DQN84_RS07750 (NCTC4824_01593)	-	1625154..1626296 (+)	1143	WP_066137276.1	cysteine desulfurase family protein	-
DQN84_RS07755 (NCTC4824_01594)	mnmA	1626313..1627428 (+)	1116	WP_066137279.1	tRNA 2-thiouridine(34) synthase MnmA	-
DQN84_RS07760 (NCTC4824_01595)	-	1627593..1628264 (+)	672	WP_066137281.1	tetratricopeptide repeat protein	-
DQN84_RS07765 (NCTC4824_01596)	-	1628316..1628624 (+)	309	WP_231955909.1	Imm30 family immunity protein	-
DQN84_RS07770 (NCTC4824_01598)	recD2	1628838..1631237 (+)	2400	WP_066137283.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DQN84_RS07775 (NCTC4824_01599)	-	1631267..1631806 (+)	540	WP_231955942.1	PRC-barrel domain-containing protein	-
DQN84_RS07780 (NCTC4824_01600)	-	1631766..1631954 (+)	189	WP_082788570.1	hypothetical protein	-
DQN84_RS07785 (NCTC4824_01601)	-	1632065..1633141 (+)	1077	WP_066137287.1	AI-2E family transporter	-

Sequence

Protein

• Length: 799 a.a.
• Molecular weight: 90371.15 Da
• Isoelectric Point: 4.8827

>NTDB_id=1142434 DQN84_RS07770 WP_066137283.1 1628838..1631237(+) (recD2) [Lederbergia lenta strain NCTC4824]
MEQQNSLDLFSENEKYIKGRHLVTIFHNEQNLYSVIRVRVEDTNEENKDKEAVVTGYFPKIHEEETYVFYGQYKEHPKFG
TQFHATHFKKEMPQTKQGVATYLSSGLFKGIGKKTAERIVETLGENAISQILQQPSLLDSIPKLAPEKAKELYDSLLEHQ
GLEQVMIGLNQYGFGPQISMKIYQAYKEETLKIIQENPYQLIEAVEGIGFGRADELGSQLGIKGNHPDRIKAGCLYVLEQ
ECLQNGHVYCDAADLLEEVKRLLEDSQPNEISYQDISSELIKLEEESKIVGENKRVYMPSLYFSEKGIVTNIQQVLEQKE
YAEQFPESEFLMALGELEERLDVQYAPSQKEAIQTALMSPMMILTGGPGTGKTTVIKGIVELYAELHGCSLDPHAYKKEE
PFPILLTAPTGRAAKRMSESTGLPAMTIHRLLGMTGQENLDNEDEREIEGKLIIVDEMSMVDTWLAHQLLKALPVQIQVI
FVGDEDQLPSVGPGQVLKDLLKSGTIPTVQLTDIYRQAEGSSIIELAHEIKKGQLPSDLIKPQRDRSFIRCQSSQIAEAV
EKVVKNAKQKGYTAKDIQVLAPMYRGPAGIDNLNRILQEIFNANPDGKRKELKFGDVKYRIGDKVLQLINQPEQHVFNGD
MGEIISIFYAKENTEKQDMVIVAFEGTEVTYTRADLNQITHAFCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKQFLILCGEESAFRIGIEREDDQKRKTSLFEKLTAVTPAESVNEAESDMPTFLKEESMHLIDPMIGMENVSPYDFVD

Nucleotide

• Length: 2400 bp

>NTDB_id=1142434 DQN84_RS07770 WP_066137283.1 1628838..1631237(+) (recD2) [Lederbergia lenta strain NCTC4824]
ATGGAACAGCAAAATTCTCTTGATTTGTTTTCAGAAAATGAAAAATACATAAAAGGTCGCCATTTGGTGACTATTTTTCA
TAATGAGCAAAATTTGTATTCTGTCATTCGTGTCAGGGTGGAAGATACGAATGAAGAAAACAAAGATAAGGAAGCGGTAG
TCACAGGATATTTTCCGAAAATACATGAGGAAGAAACATATGTTTTTTATGGTCAATATAAAGAACATCCCAAGTTTGGG
ACACAGTTTCATGCAACTCATTTTAAAAAGGAAATGCCGCAGACAAAACAAGGGGTTGCTACATACTTATCAAGTGGTCT
GTTTAAAGGTATCGGTAAAAAAACAGCAGAAAGGATTGTTGAAACACTAGGAGAAAATGCCATTAGCCAAATTCTTCAAC
AACCATCTCTTCTCGATAGCATACCAAAGCTAGCTCCCGAAAAAGCGAAGGAATTATATGATTCTTTACTTGAACATCAA
GGATTAGAACAAGTAATGATTGGACTAAACCAATACGGTTTTGGTCCACAAATCTCCATGAAAATTTATCAAGCTTATAA
AGAAGAAACATTGAAGATTATTCAAGAAAATCCTTATCAGTTAATTGAAGCTGTAGAGGGAATTGGTTTCGGCAGAGCGG
ATGAACTTGGCTCTCAATTGGGTATAAAAGGAAACCATCCAGACCGGATAAAAGCAGGCTGTCTATACGTACTTGAACAG
GAATGTTTACAAAATGGTCACGTGTATTGCGATGCAGCTGATTTACTAGAAGAAGTAAAAAGATTGTTGGAGGATAGTCA
ACCTAATGAAATTTCATATCAAGATATTTCTTCGGAGCTAATTAAACTTGAGGAAGAAAGCAAAATCGTTGGTGAAAACA
AACGGGTATATATGCCATCTCTTTACTTTTCTGAAAAAGGGATTGTCACGAATATTCAGCAAGTTTTGGAACAAAAGGAA
TATGCTGAACAATTCCCAGAATCCGAGTTTTTAATGGCGCTTGGTGAGTTAGAGGAGCGCTTAGATGTGCAATATGCTCC
ATCCCAAAAGGAAGCGATTCAAACCGCATTAATGAGTCCAATGATGATATTAACAGGTGGACCAGGGACTGGAAAAACAA
CTGTTATTAAAGGGATTGTAGAACTCTACGCTGAACTGCACGGATGTTCTCTTGACCCACATGCGTATAAAAAAGAAGAA
CCCTTCCCGATCCTATTAACAGCTCCTACTGGTCGCGCGGCGAAAAGGATGTCCGAATCCACTGGTTTACCGGCGATGAC
CATTCACCGTCTACTTGGAATGACTGGACAGGAAAACCTTGATAATGAAGACGAACGGGAAATTGAAGGAAAGCTTATCA
TCGTCGATGAAATGTCGATGGTTGATACATGGCTTGCACATCAGCTTTTAAAAGCACTCCCCGTACAAATTCAAGTGATT
TTTGTTGGGGATGAAGATCAGTTGCCATCCGTGGGTCCAGGACAAGTTCTAAAAGACTTACTTAAATCTGGAACCATTCC
AACTGTGCAATTAACTGATATATATCGGCAGGCAGAAGGTTCTTCTATTATTGAACTGGCACATGAAATAAAAAAAGGGC
AACTTCCTTCTGATCTTATAAAACCACAACGAGATCGATCATTTATTAGGTGTCAATCTTCCCAAATTGCTGAAGCTGTT
GAGAAAGTTGTTAAAAATGCAAAGCAAAAGGGATATACAGCAAAAGATATCCAAGTATTGGCCCCCATGTATCGCGGCCC
AGCTGGTATTGATAATTTGAATCGAATACTACAAGAGATTTTCAACGCAAATCCGGATGGTAAAAGGAAAGAACTAAAGT
TCGGTGACGTTAAATATCGAATTGGCGATAAAGTATTGCAACTTATTAATCAACCTGAGCAACATGTGTTTAATGGCGAT
ATGGGAGAAATTATCTCCATTTTTTATGCGAAAGAAAATACAGAAAAACAAGATATGGTTATCGTTGCTTTTGAAGGGAC
GGAAGTGACATATACAAGGGCTGACTTAAATCAAATCACCCATGCTTTTTGTTGCTCCATCCATAAATCGCAAGGAAGTG
AATTTCCAATTGTCATACTCCCGGTAGTGAAGAGTTATTATCGAATGCTTCGACGAAATTTATTATATACGGCAATTACA
CGAAGTAAGCAATTTCTCATTTTATGTGGAGAAGAAAGTGCTTTTCGTATCGGTATTGAAAGAGAAGATGATCAAAAAAG
AAAAACTTCACTTTTTGAAAAATTAACCGCAGTAACTCCTGCTGAATCTGTGAATGAAGCTGAATCGGACATGCCTACCT
TTCTCAAAGAAGAGTCCATGCATTTAATTGATCCAATGATTGGCATGGAAAATGTTTCACCTTATGATTTTGTTGACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-553)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-664)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-249)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

3D structure

• AlphaFold DB: A0A2X4VUW0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	62.281	99.875	0.622