Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DQN84_RS07690 Genome accession   NZ_LS483476
Coordinates   1609829..1612195 (+) Length   788 a.a.
NCBI ID   WP_066137252.1    Uniprot ID   A0A2X4VZH9
Organism   Lederbergia lenta strain NCTC4824     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1604829..1617195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN84_RS07670 (NCTC4824_01574) spoVB 1604942..1606489 (-) 1548 WP_066137242.1 stage V sporulation protein B -
  DQN84_RS07675 (NCTC4824_01575) - 1606611..1606925 (+) 315 WP_066137245.1 post-transcriptional regulator -
  DQN84_RS07680 (NCTC4824_01576) secDF 1607062..1609332 (+) 2271 WP_066137247.1 protein translocase subunit SecDF -
  DQN84_RS07685 (NCTC4824_01577) - 1609444..1609734 (+) 291 WP_066137250.1 LapA family protein -
  DQN84_RS07690 (NCTC4824_01578) recJ 1609829..1612195 (+) 2367 WP_066137252.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DQN84_RS07695 (NCTC4824_01579) - 1612186..1612698 (+) 513 WP_066137254.1 adenine phosphoribosyltransferase -
  DQN84_RS07700 (NCTC4824_01580) - 1613093..1615282 (+) 2190 WP_066137256.1 RelA/SpoT family protein -
  DQN84_RS07705 (NCTC4824_01581) dtd 1615300..1615737 (+) 438 WP_066137259.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 87826.87 Da        Isoelectric Point: 5.3197

>NTDB_id=1142433 DQN84_RS07690 WP_066137252.1 1609829..1612195(+) (recJ) [Lederbergia lenta strain NCTC4824]
MLYSKTRWSIRETNDQTSKELAKQLNIAPLVATLLVNRGMDNIDTAKEFLFPEKEAFHDPFLFEDMSISTSRIKKAIEKE
EPILIFGDYDADGVTSTSILMTTLQELGANVSYYIPNRFTEGYGPNEKAFRKVADEGIKLIITVDNGIAALHEAKVAKEL
GMDLIITDHHEPGPELPDAYAIIHPKLPGTKYPFSDLAGAGVAFKLAHALLGDDVPTHLLDLATIGTIADLVPLHGENRL
IAKKGLKNLSLSTRPGLKALCKVAGANLSEVNEETVGFAIAPRLNAVGRLEHAGPAVELLMTQDITIAEQLSEEIDLINK
ERKAIVEEIEKEAINIVEAEYPADENSVLVIGKEGWNAGVIGIVASRLVERYYRPIIMLSYDYEAGLAKGSARSIKGFDL
FKNLSTLSNLLPHFGGHPMAAGMTLDIKNVNEFRIKLNDAATQQLSSNDFIPVTELDASIALNEVSIDTIHQLDMLAPYG
MKNPKPKVLIADTAISGVRKIGSNKNHLKLTLEKEGHALDGVGFNLGNVADEISPGSKVSVIGELSINEWNNMRKPQIFL
KDIAVKEWQLFDMRGNNQLKQRLSHLPKLNCLNIVFDEGHLKSLPATQTNTVLITDVDQAKKMDIDDKSLVLLDLPSNIN
VLKKLVDGKNPARIYACFIHDQGEFFDTLPTRDHFKWFYAFLLKRQTFDVIKHGADLASYRGWTKETINFMSKVFFELNF
VTIKDGLIIINPVKTKQDLTASPTYQQKQEQLEIENILLYSSYEQLKLWFNDRLAQKALDEEEMEAWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=1142433 DQN84_RS07690 WP_066137252.1 1609829..1612195(+) (recJ) [Lederbergia lenta strain NCTC4824]
ATGTTATATTCAAAAACACGGTGGAGCATTCGGGAGACGAATGATCAGACCAGTAAAGAACTTGCAAAACAATTAAATAT
TGCTCCACTTGTCGCTACATTATTAGTCAATCGTGGAATGGACAATATAGATACAGCAAAGGAATTTTTATTTCCAGAAA
AGGAAGCATTTCATGATCCGTTTCTATTTGAAGATATGAGTATAAGTACGAGCAGAATAAAAAAAGCAATAGAAAAGGAA
GAACCTATATTAATTTTCGGAGATTATGATGCGGACGGTGTTACTAGTACATCCATCTTAATGACAACTTTGCAAGAACT
AGGTGCAAATGTTAGTTATTACATACCAAATCGGTTTACTGAAGGATATGGGCCAAATGAAAAGGCCTTTCGTAAAGTTG
CTGATGAAGGGATTAAATTAATTATCACAGTTGATAATGGTATAGCTGCTTTACATGAAGCGAAAGTGGCCAAAGAACTT
GGAATGGATTTGATCATTACAGATCATCATGAACCCGGTCCTGAACTACCTGATGCTTATGCAATTATTCATCCAAAGTT
GCCAGGTACAAAATATCCATTCTCAGACCTTGCAGGTGCTGGTGTAGCGTTTAAGCTTGCTCATGCTTTACTTGGTGATG
ATGTACCCACCCATCTGTTGGATTTGGCTACAATCGGCACGATTGCAGACCTTGTACCACTACATGGTGAAAACCGCCTA
ATTGCCAAAAAAGGTTTGAAAAATTTATCTTTATCTACAAGACCAGGATTGAAAGCACTTTGTAAAGTCGCTGGGGCAAA
TCTTTCTGAAGTGAATGAAGAAACAGTAGGTTTTGCGATAGCTCCTCGCTTAAATGCAGTTGGAAGGTTAGAACATGCAG
GACCAGCGGTAGAATTATTGATGACTCAAGATATCACAATCGCAGAGCAATTATCTGAAGAAATAGATCTGATTAATAAA
GAACGGAAAGCGATTGTGGAAGAAATAGAGAAAGAAGCAATTAACATAGTTGAGGCCGAATACCCAGCCGATGAAAATAG
TGTTCTTGTGATCGGTAAGGAAGGGTGGAATGCTGGTGTTATCGGGATTGTTGCTTCGAGGTTAGTAGAACGTTATTATC
GACCGATCATTATGTTAAGTTACGATTATGAAGCGGGGCTAGCAAAAGGGTCGGCTCGGAGTATAAAGGGATTTGATTTA
TTTAAAAATCTATCTACTTTATCTAATTTACTTCCACACTTTGGTGGACATCCGATGGCTGCGGGAATGACATTAGATAT
TAAAAATGTGAATGAGTTTCGTATTAAATTAAACGATGCAGCAACACAGCAACTTTCTTCAAATGATTTTATACCAGTTA
CAGAACTAGATGCCTCCATTGCCCTCAATGAGGTAAGTATTGATACAATTCATCAATTGGATATGCTTGCTCCATATGGT
ATGAAAAACCCTAAGCCAAAAGTATTAATTGCAGACACAGCCATTTCTGGAGTCCGTAAAATTGGCAGTAATAAAAACCA
TTTAAAGCTAACTTTAGAAAAGGAAGGTCATGCCCTTGACGGTGTTGGCTTTAATCTTGGAAATGTAGCAGATGAAATAT
CCCCAGGATCAAAAGTTTCCGTGATTGGTGAACTCTCCATTAATGAGTGGAATAATATGAGGAAACCGCAGATTTTCTTA
AAAGATATAGCTGTGAAAGAATGGCAATTGTTTGATATGCGCGGAAATAATCAGTTGAAACAACGATTATCTCATTTACC
GAAATTAAATTGTTTAAATATTGTTTTTGACGAAGGTCATCTTAAGTCACTTCCGGCAACACAGACGAATACTGTCTTAA
TAACAGATGTAGACCAAGCAAAAAAAATGGATATTGATGATAAGAGTCTTGTGCTACTAGATTTACCATCTAATATTAAT
GTTTTGAAAAAACTAGTCGATGGTAAAAATCCCGCACGTATCTATGCCTGTTTTATTCATGATCAAGGCGAATTCTTTGA
TACATTGCCAACGAGGGACCATTTTAAATGGTTTTATGCGTTCTTATTAAAGCGACAGACCTTTGATGTGATCAAGCATG
GCGCTGACCTTGCTTCTTATCGTGGTTGGACGAAAGAAACAATTAATTTTATGTCAAAAGTGTTTTTTGAACTAAACTTT
GTTACAATAAAGGATGGCTTAATAATAATAAATCCAGTAAAAACGAAACAAGATTTGACAGCTTCACCAACGTATCAACA
AAAGCAAGAGCAATTAGAAATTGAAAATATATTACTTTATTCATCATACGAACAATTAAAGCTATGGTTTAATGATAGGC
TTGCGCAAAAAGCGCTTGACGAGGAGGAAATGGAAGCATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(317-440)

RecJ OB domain (RecJ_OB)

(457-562)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-770)

DHH family (DHH)

(83-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4VZH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.846

98.985

0.533

Multiple sequence alignment