Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DQN84_RS02240 Genome accession   NZ_LS483476
Coordinates   441026..441976 (+) Length   316 a.a.
NCBI ID   WP_066143006.1    Uniprot ID   A0A2X4VK21
Organism   Lederbergia lenta strain NCTC4824     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436026..446976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN84_RS02230 (NCTC4824_00455) - 438526..439104 (+) 579 WP_066143012.1 glycerol-3-phosphate responsive antiterminator -
  DQN84_RS02235 (NCTC4824_00456) glpK 439101..440594 (+) 1494 WP_066143009.1 glycerol kinase GlpK -
  DQN84_RS02240 (NCTC4824_00457) ceuB 441026..441976 (+) 951 WP_066143006.1 ABC transporter permease Machinery gene
  DQN84_RS02245 (NCTC4824_00458) - 441969..442919 (+) 951 WP_066143003.1 iron chelate uptake ABC transporter family permease subunit -
  DQN84_RS02250 (NCTC4824_00459) - 442916..443677 (+) 762 WP_066142998.1 ABC transporter ATP-binding protein -
  DQN84_RS02255 (NCTC4824_00460) - 443719..445692 (-) 1974 WP_066142995.1 alkaline phosphatase family protein -
  DQN84_RS02260 (NCTC4824_00461) - 446054..446896 (+) 843 WP_411825145.1 SAM hydrolase/SAM-dependent halogenase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34783.01 Da        Isoelectric Point: 10.0640

>NTDB_id=1142428 DQN84_RS02240 WP_066143006.1 441026..441976(+) (ceuB) [Lederbergia lenta strain NCTC4824]
MKTRYMIILLILASFLSLFVGVSSISPLDLLDFQSEETRIFLISRLPRLIAIILAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANATMLEKMAVAFAFALAGTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSVTTFFAYRADVI
QNMSAWLQGDFSMIMKGRYELLYISIPVIIVAYLYANRFTVAGMGEDFSKNLGLAYKRVVNFGLILVALITATVVLTVGM
IPFLGLIIPNIISIAKGDHLQKTLPHTALLGATFLLVCDILGRVIIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1142428 DQN84_RS02240 WP_066143006.1 441026..441976(+) (ceuB) [Lederbergia lenta strain NCTC4824]
ATGAAAACTCGATATATGATCATACTTCTTATTTTGGCATCTTTTCTTTCCTTATTCGTTGGGGTAAGCAGTATTTCGCC
TCTCGATTTACTCGATTTTCAATCAGAAGAAACGAGGATTTTCCTAATTAGCCGTCTGCCTCGTTTGATCGCTATTATTC
TAGCAGGAGCAGGCATGAGTATTGCTGGATTGATTATGCAGCAGCTAAGCCGTAATAAATTTGTTTCTCCAACTACTGCA
GGTACATTAGATGCAACAAGGCTTGGGATACTCGTCTCTATGTTATTATTTGCGAATGCAACGATGCTGGAAAAAATGGC
TGTTGCTTTTGCCTTTGCGTTAGCTGGTACATTCTTATTCATGCAAATTTTAGATCGGATCAAGTTTAAGGATGCTATTT
TTATTCCACTTGTAGGGCTCATGTTCGGGAATATCTTGTCTTCCGTGACCACATTTTTTGCATATCGTGCGGATGTTATT
CAAAACATGTCTGCTTGGCTGCAAGGGGATTTTTCTATGATTATGAAAGGTCGTTATGAACTTTTATATATTAGTATACC
AGTAATAATAGTAGCCTATCTCTATGCAAACCGTTTTACCGTGGCGGGAATGGGAGAGGATTTTTCGAAAAATCTTGGGC
TTGCATATAAACGCGTCGTTAATTTCGGTCTCATTCTAGTTGCACTTATCACAGCAACCGTCGTATTAACGGTTGGAATG
ATTCCGTTTCTAGGACTAATTATTCCAAACATTATTTCTATAGCTAAAGGTGATCACTTACAGAAAACTTTGCCGCATAC
AGCACTGCTTGGTGCTACGTTCCTTTTAGTATGCGATATATTGGGTCGCGTGATTATTTATCCATACGAAATTTCCATCA
GTCTGATGGTTGGAGTAATCGGAAGCGGTATTTTCTTATATTTACTGTTTCGGAGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4VK21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522

Multiple sequence alignment