Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQO02_RS15830 Genome accession   NZ_LS483465
Coordinates   3006093..3006698 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10080     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3001093..3011698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO02_RS15815 (NCTC10080_03004) helD 3001310..3003364 (-) 2055 WP_023203511.1 DNA helicase IV -
  DQO02_RS15820 (NCTC10080_03005) - 3003488..3003934 (+) 447 WP_001261222.1 YccF domain-containing protein -
  DQO02_RS15825 (NCTC10080_03006) yccS 3003953..3006106 (+) 2154 WP_023203510.1 YccS family putative transporter -
  DQO02_RS15830 (NCTC10080_03007) sxy/tfoX 3006093..3006698 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  DQO02_RS15835 (NCTC10080_03008) sulA 3006915..3007424 (+) 510 WP_023203509.1 SOS-induced cell division inhibitor SulA -
  DQO02_RS15840 (NCTC10080_03009) ompA 3007781..3008833 (+) 1053 WP_111763753.1 porin OmpA -
  DQO02_RS15845 (NCTC10080_03010) matP 3008905..3009357 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  DQO02_RS15850 (NCTC10080_03011) - 3009543..3011303 (+) 1761 WP_023203508.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=1142252 DQO02_RS15830 WP_001202375.1 3006093..3006698(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10080]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1142252 DQO02_RS15830 WP_001202375.1 3006093..3006698(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10080]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTCCCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCACTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment