Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQN30_RS02245 Genome accession   NZ_LS483458
Coordinates   440528..441181 (-) Length   217 a.a.
NCBI ID   WP_111696162.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain NCTC10839     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 435528..446181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN30_RS02245 sxy/tfoX 440528..441181 (-) 654 WP_111696162.1 DNA transformation protein TfoX Regulator
  DQN30_RS02250 (NCTC10839_00447) recA 441566..442630 (+) 1065 WP_111696163.1 recombinase RecA Machinery gene
  DQN30_RS02255 (NCTC10839_00448) recX 442710..443168 (+) 459 WP_111696164.1 recombination regulator RecX -
  DQN30_RS02260 (NCTC10839_00449) crcB 443165..443551 (-) 387 WP_111696165.1 fluoride efflux transporter CrcB -
  DQN30_RS02265 (NCTC10839_00450) - 443551..444369 (-) 819 WP_111696166.1 Cof-type HAD-IIB family hydrolase -
  DQN30_RS02270 (NCTC10839_00451) hcr 444481..445503 (-) 1023 WP_111696167.1 NADH oxidoreductase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25335.59 Da        Isoelectric Point: 9.9975

>NTDB_id=1142179 DQN30_RS02245 WP_111696162.1 440528..441181(-) (sxy/tfoX) [Haemophilus haemolyticus strain NCTC10839]
MNIKDEHIHNVCSILDQLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELAIQLSKLGCEPFTTNELNKRFVL
SQYYALSDQVMRNNMLCRRLIILSIQQIRNQKLDRTLRKLNRLKDLPNLTIKHERALIKVGITDVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQYKNSQFLSQSEKERLLKKLNEILRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1142179 DQN30_RS02245 WP_111696162.1 440528..441181(-) (sxy/tfoX) [Haemophilus haemolyticus strain NCTC10839]
ATGAATATAAAAGACGAGCATATACATAATGTTTGCTCTATATTAGATCAGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACAGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAGAATAAAAAACTTTATCTACGTGGTG
AGGATGAACTTGCAATTCAATTAAGTAAATTAGGTTGTGAACCGTTTACAACAAATGAGTTGAATAAGAGATTTGTACTT
TCTCAATATTATGCACTTTCAGATCAGGTGATGCGTAATAATATGTTGTGTAGAAGGTTGATTATTCTTTCTATTCAGCA
AATTCGCAATCAGAAGTTAGATCGTACTTTAAGAAAGCTAAATAGATTAAAGGATTTACCCAATTTAACTATCAAGCATG
AAAGAGCGCTAATAAAAGTTGGCATTACTGATGTTGCTATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGCGGCAGCGGAGCAACTTTAGATTTTTATTGGAAGTTAGTATGTGCTTTGCAATATAAAAATAGCCAATTTTT
AAGTCAATCTGAAAAAGAGCGTTTATTAAAGAAATTAAACGAAATTTTGAGAAAGAATGGCTTGAAAGGCTATAGAAAAT
TAGATGACGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

89.401

100

0.894

Multiple sequence alignment