Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOKI422_RS00430 Genome accession   NZ_CP006824
Coordinates   88227..89540 (+) Length   437 a.a.
NCBI ID   WP_025276576.1    Uniprot ID   -
Organism   Helicobacter pylori oki422     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 83227..94540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI422_RS00410 (HPOKI422_00440) crdR 83541..84182 (+) 642 WP_025276574.1 copper response regulator transcription factor CrdR -
  HPOKI422_RS00415 (HPOKI422_00445) crdS 84148..85350 (+) 1203 WP_080275946.1 copper-sensing histidine kinase CrdS -
  HPOKI422_RS00420 (HPOKI422_00450) - 85353..86753 (+) 1401 WP_025275482.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOKI422_RS00425 (HPOKI422_00455) - 86764..88230 (+) 1467 WP_025275483.1 replicative DNA helicase -
  HPOKI422_RS00430 (HPOKI422_00460) comEC/comE3 88227..89540 (+) 1314 WP_025276576.1 ComEC/Rec2 family competence protein Machinery gene
  HPOKI422_RS00435 (HPOKI422_00465) mqnP 89611..90453 (+) 843 WP_235169399.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOKI422_RS00440 (HPOKI422_00470) - 90446..90940 (+) 495 WP_025276578.1 hypothetical protein -
  HPOKI422_RS00445 (HPOKI422_00475) - 90953..91459 (+) 507 WP_025276579.1 DUF6115 domain-containing protein -
  HPOKI422_RS00450 (HPOKI422_00480) - 91453..92256 (+) 804 WP_025275488.1 phosphatidylserine decarboxylase -
  HPOKI422_RS00455 (HPOKI422_00485) nadA 92246..93250 (+) 1005 WP_025275489.1 quinolinate synthase NadA -
  HPOKI422_RS00460 (HPOKI422_00490) nadC 93250..94071 (+) 822 WP_025275490.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50296.20 Da        Isoelectric Point: 9.7934

>NTDB_id=114210 HPOKI422_RS00430 WP_025276576.1 88227..89540(+) (comEC/comE3) [Helicobacter pylori oki422]
MKDKTFQGAFELLSTPKEYLVCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTENFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHLLNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=114210 HPOKI422_RS00430 WP_025276576.1 88227..89540(+) (comEC/comE3) [Helicobacter pylori oki422]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACCTGGTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAATGCACTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTATATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACGGAAAATTTTTTTAAAACCTCTTCTTTTTTGATGCGATCGTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCACC
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954

Multiple sequence alignment