Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL01_RS09585 Genome accession   NZ_LS483451
Coordinates   1798054..1798764 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793054..1803764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS09565 - 1793595..1793843 (-) 249 WP_000364990.1 YneF family protein -
  DQL01_RS09570 treC 1794099..1795724 (-) 1626 WP_111702712.1 alpha,alpha-phosphotrehalase -
  DQL01_RS09580 treP 1795902..1797869 (-) 1968 WP_172449513.1 PTS system trehalose-specific EIIBC component -
  DQL01_RS09585 treR 1798054..1798764 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  DQL01_RS09590 - 1798797..1799600 (-) 804 WP_111702714.1 ABC transporter ATP-binding protein -
  DQL01_RS09595 - 1799613..1800448 (-) 836 Protein_1838 ABC transporter permease -
  DQL01_RS09600 - 1800460..1801269 (-) 810 WP_230401524.1 ABC transporter substrate-binding protein -
  DQL01_RS09605 amiF 1801888..1802814 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=1142073 DQL01_RS09585 WP_000760673.1 1798054..1798764(+) (treR) [Streptococcus pneumoniae strain 4041STDY6836166]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1142073 DQL01_RS09585 WP_000760673.1 1798054..1798764(+) (treR) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGAAGAAATACCAACAATTATTCAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCTAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment