Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL12_RS09595 Genome accession   NZ_LS483450
Coordinates   1785130..1785840 (+) Length   236 a.a.
NCBI ID   WP_050255457.1    Uniprot ID   A0A4J1MZV9
Organism   Streptococcus pneumoniae strain 4041STDY6583227     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780130..1790840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL12_RS09575 - 1780671..1780919 (-) 249 WP_000364990.1 YneF family protein -
  DQL12_RS09580 treC 1781175..1782800 (-) 1626 WP_000171203.1 alpha,alpha-phosphotrehalase -
  DQL12_RS09590 treP 1782978..1784945 (-) 1968 WP_042516390.1 PTS system trehalose-specific EIIBC component -
  DQL12_RS09595 treR 1785130..1785840 (+) 711 WP_050255457.1 trehalose operon repressor Regulator
  DQL12_RS09600 - 1785873..1786676 (-) 804 WP_000157674.1 ABC transporter ATP-binding protein -
  DQL12_RS09605 - 1786689..1787566 (-) 878 Protein_1807 ABC transporter permease -
  DQL12_RS09610 - 1787578..1788387 (-) 810 Protein_1808 ABC transporter substrate-binding protein -
  DQL12_RS09615 amiF 1789016..1789942 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27667.88 Da        Isoelectric Point: 8.9698

>NTDB_id=1141992 DQL12_RS09595 WP_050255457.1 1785130..1785840(+) (treR) [Streptococcus pneumoniae strain 4041STDY6583227]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVFVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1141992 DQL12_RS09595 WP_050255457.1 1785130..1785840(+) (treR) [Streptococcus pneumoniae strain 4041STDY6583227]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATTCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4J1MZV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.898

100

0.589

Multiple sequence alignment