Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQK98_RS09170 Genome accession   NZ_LS483449
Coordinates   1745717..1746643 (-) Length   308 a.a.
NCBI ID   WP_000103700.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836170     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740717..1751643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQK98_RS09145 treR 1741479..1742189 (+) 711 WP_111688171.1 trehalose operon repressor Regulator
  DQK98_RS09155 - 1742344..1743629 (+) 1286 WP_416236712.1 ISL3 family transposase -
  DQK98_RS09160 amiF 1743704..1744630 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  DQK98_RS09165 amiE 1744641..1745708 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  DQK98_RS09170 amiD 1745717..1746643 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  DQK98_RS09175 amiC 1746643..1748139 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  DQK98_RS09180 amiA3 1748206..1750185 (-) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34634.76 Da        Isoelectric Point: 9.7939

>NTDB_id=1141918 DQK98_RS09170 WP_000103700.1 1745717..1746643(-) (amiD) [Streptococcus pneumoniae strain 4041STDY6836170]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1141918 DQK98_RS09170 WP_000103700.1 1745717..1746643(-) (amiD) [Streptococcus pneumoniae strain 4041STDY6836170]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment