Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOKI154_RS06620 Genome accession   NZ_CP006823
Coordinates   1365216..1366529 (-) Length   437 a.a.
NCBI ID   WP_025367045.1    Uniprot ID   -
Organism   Helicobacter pylori oki154     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360216..1371529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI154_RS06590 (HPOKI154_06855) nadC 1360679..1361500 (-) 822 WP_025314140.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPOKI154_RS06595 (HPOKI154_06860) nadA 1361500..1362510 (-) 1011 WP_025367043.1 quinolinate synthase NadA -
  HPOKI154_RS06600 (HPOKI154_06865) - 1362500..1363303 (-) 804 WP_025367044.1 phosphatidylserine decarboxylase -
  HPOKI154_RS06605 (HPOKI154_06870) - 1363300..1363803 (-) 504 WP_000953085.1 DUF6115 domain-containing protein -
  HPOKI154_RS06610 (HPOKI154_06875) - 1363816..1364310 (-) 495 WP_025314143.1 hypothetical protein -
  HPOKI154_RS06615 (HPOKI154_06880) mqnP 1364303..1365187 (-) 885 WP_025314144.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOKI154_RS06620 (HPOKI154_06885) comEC/comE3 1365216..1366529 (-) 1314 WP_025367045.1 ComEC/Rec2 family competence protein Machinery gene
  HPOKI154_RS06625 (HPOKI154_06890) - 1366526..1367986 (-) 1461 WP_025314146.1 replicative DNA helicase -
  HPOKI154_RS06630 (HPOKI154_06895) - 1367997..1369391 (-) 1395 WP_025314147.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOKI154_RS06635 (HPOKI154_06900) crdS 1369394..1370596 (-) 1203 WP_080274498.1 copper-sensing histidine kinase CrdS -
  HPOKI154_RS06640 (HPOKI154_06905) crdR 1370562..1371203 (-) 642 WP_025314149.1 copper response regulator transcription factor CrdR -
  HPOKI154_RS08175 (HPOKI154_06910) - 1371289..1371513 (-) 225 Protein_1282 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50168.12 Da        Isoelectric Point: 9.8898

>NTDB_id=114188 HPOKI154_RS06620 WP_025367045.1 1365216..1366529(-) (comEC/comE3) [Helicobacter pylori oki154]
MKDKTFQGAFELLTTPKEYLLYGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKAYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLAIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=114188 HPOKI154_RS06620 WP_025367045.1 1365216..1366529(-) (comEC/comE3) [Helicobacter pylori oki154]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTATGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCTTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAGCCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGTGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGTTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment