Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQK99_RS06120 Genome accession   NZ_LS483448
Coordinates   1149009..1149818 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 4041STDY6836167     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144009..1154818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQK99_RS06085 - 1144069..1145055 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  DQK99_RS06090 - 1145356..1146077 (-) 722 Protein_1162 potassium channel family protein -
  DQK99_RS06095 - 1146124..1146378 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE family toxin -
  DQK99_RS06100 relB 1146380..1146622 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  DQK99_RS06105 - 1146699..1147513 (-) 815 Protein_1165 IS5-like element IS1515 family transposase -
  DQK99_RS06115 - 1147689..1148945 (+) 1257 WP_000530078.1 ISL3 family transposase -
  DQK99_RS06120 vicX 1149009..1149818 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DQK99_RS06125 micB 1149820..1151169 (-) 1350 WP_000886213.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQK99_RS06130 micA 1151162..1151866 (-) 705 WP_000722076.1 response regulator YycF Regulator
  DQK99_RS06135 mutY 1151922..1153097 (-) 1176 WP_000886152.1 A/G-specific adenine glycosylase -
  DQK99_RS12545 - 1153194..1153319 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=1141823 DQK99_RS06120 WP_001289493.1 1149009..1149818(-) (vicX) [Streptococcus pneumoniae strain 4041STDY6836167]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1141823 DQK99_RS06120 WP_001289493.1 1149009..1149818(-) (vicX) [Streptococcus pneumoniae strain 4041STDY6836167]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment