Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ECONIH1_RS15415 Genome accession   NZ_CP009859
Coordinates   3119240..3119755 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ECONIH1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114240..3124755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECONIH1_RS15390 (ECONIH1_15390) ygaZ 3114639..3115376 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  ECONIH1_RS15395 (ECONIH1_15395) ygaH 3115366..3115701 (+) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  ECONIH1_RS15400 (ECONIH1_15400) emrR 3115792..3116322 (+) 531 WP_000378441.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ECONIH1_RS15405 (ECONIH1_15405) emrA 3116449..3117621 (+) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ECONIH1_RS15410 (ECONIH1_15410) emrB 3117638..3119176 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  ECONIH1_RS15415 (ECONIH1_15415) luxS 3119240..3119755 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ECONIH1_RS15420 (ECONIH1_15420) gshA 3119905..3121461 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  ECONIH1_RS15425 (ECONIH1_15425) yqaA 3121534..3121962 (-) 429 WP_001287454.1 YqaA family protein -
  ECONIH1_RS15430 (ECONIH1_15430) yqaB 3121959..3122525 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ECONIH1_RS15460 (ECONIH1_15460) csrA 3123713..3123898 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=114178 ECONIH1_RS15415 WP_001130211.1 3119240..3119755(-) (luxS) [Escherichia coli strain ECONIH1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=114178 ECONIH1_RS15415 WP_001130211.1 3119240..3119755(-) (luxS) [Escherichia coli strain ECONIH1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731