Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DQN50_RS04475 Genome accession   NZ_LS483445
Coordinates   987764..988705 (+) Length   313 a.a.
NCBI ID   WP_063454207.1    Uniprot ID   -
Organism   Moraxella catarrhalis strain NCTC11020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 982764..993705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN50_RS04465 (NCTC11020_00890) - 983686..985098 (-) 1413 WP_063454208.1 pitrilysin family protein -
  DQN50_RS04470 (NCTC11020_00892) - 985513..987636 (+) 2124 WP_003671057.1 PhoX family phosphatase -
  DQN50_RS04475 (NCTC11020_00893) pilA 987764..988705 (+) 942 WP_063454207.1 signal recognition particle-docking protein FtsY Machinery gene
  DQN50_RS04480 (NCTC11020_00894) - 988702..989295 (+) 594 WP_003673115.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  DQN50_RS04485 (NCTC11020_00895) - 989336..990361 (+) 1026 WP_003658196.1 quinone-dependent dihydroorotate dehydrogenase -
  DQN50_RS04490 (NCTC11020_00896) - 990366..990878 (+) 513 WP_003658194.1 CvpA family protein -
  DQN50_RS04495 (NCTC11020_00897) purF 990944..992473 (+) 1530 WP_063454206.1 amidophosphoribosyltransferase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33652.59 Da        Isoelectric Point: 5.2587

>NTDB_id=1141775 DQN50_RS04475 WP_063454207.1 987764..988705(+) (pilA) [Moraxella catarrhalis strain NCTC11020]
MSENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRIIKNLTEQTARGDLIYSH
ALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWG
ERNGIAVIAQGHGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTG
QNAINQVQVFSEAVNLTGISITKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPKDFVDALLEKEE

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1141775 DQN50_RS04475 WP_063454207.1 987764..988705(+) (pilA) [Moraxella catarrhalis strain NCTC11020]
ATGAGCGAAAACGAAAAAGGTGGCTGGTTTTCCCGCATGAAAGCTGGACTATCAAAGTCAAGTAAAAACCTATCAGAAGG
GCTGGTTAATGTCTTGGTTGGTGGCAAACAGATTGATGATGAGCTGCTTGAGGAAGTTGAAGATCAGCTACTGGTTGCTG
ATATTGGTGTCAATGCCACCAATCGCATTATCAAAAATCTCACCGAGCAGACCGCGCGTGGCGATTTGATTTACTCGCAT
GCTTTGTATAAAGCACTCAAAACCGAGTTGACCGACATTTTGACGCCAAAAGTTGCACCTTTGATTATTGATACCACCAA
AAAGCCCTATGTCATTTTGATGGTGGGTGTCAATGGTGTTGGTAAGACCACCACAATCGGTAAGCTTGCCAAGCGTTTAC
AAAATGAGGGTAAGTCGGTCATGCTTGCCGCTGGCGACACTTTTCGAGCCGCCGCCACCGAGCAGCTACAAATTTGGGGT
GAGCGAAATGGCATTGCTGTCATCGCTCAAGGTCATGGCTCAGACAGTGCTTCGGTGATTTTTGATGCCATGCAGTCTGC
CAAGGCAAAGGGCATTGATGTGCTTATCGCTGATACAGCAGGACGCCTACAAAATAAAACGCATCTGATGAATGAACTTG
AAAAGGTTGTGCGTGTGATGAAAAAGGGCGACGAAACTGCTCCGCATGAGACGATGATCGTGCTAGATGCAGGCACAGGT
CAAAACGCCATCAATCAAGTGCAAGTATTTTCAGAAGCAGTGAATTTAACTGGCATCAGTATTACAAAGCTAGATGGGAC
AGCCAAAGGTGGTGTGGTATTTAATATCGCCCAAAATACGGATATTCCCATCCGTTTTATCGGCGTTGGAGAGGGTATTG
ACGACCTACAGCCATTTAAGCCAAAAGATTTTGTTGATGCACTTTTGGAAAAAGAAGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(110-309)

SRP54-type protein, helical bundle domain (SRP54_N)

(25-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.751

98.722

0.521

Multiple sequence alignment