Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQL20_RS09960 Genome accession   NZ_LS483444
Coordinates   1975639..1977000 (-) Length   453 a.a.
NCBI ID   WP_081453569.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC13166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970639..1982000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS09945 (NCTC11371_01943) - 1974078..1974572 (-) 495 WP_006595480.1 carbonic anhydrase -
  DQL20_RS09955 (NCTC11371_01944) - 1974861..1975556 (-) 696 WP_006595479.1 TIGR00266 family protein -
  DQL20_RS09960 (NCTC11371_01945) radA 1975639..1977000 (-) 1362 WP_081453569.1 DNA repair protein RadA Machinery gene
  DQL20_RS09965 (NCTC11371_01946) - 1977014..1977529 (-) 516 WP_006595477.1 histidine phosphatase family protein -
  DQL20_RS09970 - 1977548..1977850 (-) 303 Protein_1847 isochorismatase family protein -
  DQL20_RS09975 - 1977846..1978007 (-) 162 Protein_1848 DNA repair protein RadA -
  DQL20_RS09980 (NCTC11371_01947) - 1978018..1978557 (-) 540 WP_006595475.1 histidine phosphatase family protein -
  DQL20_RS09985 (NCTC11371_01948) - 1978559..1979005 (-) 447 WP_040803191.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49294.77 Da        Isoelectric Point: 6.6500

>NTDB_id=1141758 DQL20_RS09960 WP_081453569.1 1975639..1977000(-) (radA) [Streptococcus australis strain NCTC13166]
MAKKKTTFICQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RLQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLQGITIPNGIQVIAVSTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1141758 DQL20_RS09960 WP_081453569.1 1975639..1977000(-) (radA) [Streptococcus australis strain NCTC13166]
ATCGCAAAGAAAAAAACGACATTTATTTGTCAAAATTGTGCCTACAATTCACCCAAATACCTAGGGCGCTGTCCTAACTG
TGGTTCTTGGTCTTCTTTTGTCGAGGAAGTTGAGGTTGCAGAAGTTAAGAATGCCCGGGTGTCCTTGACAGGTGAAAAGA
CCAAACCCATGAAACTGGCGGATGTGACTTCCATCAATGTCCATCGTACTAAGACCGAGATGGAGGAATTCAACCGTGTA
CTTGGAGGCGGTGTCGTCCCAGGGAGTCTGGTCCTGATTGGTGGAGATCCAGGAATTGGGAAATCAACTCTTCTCTTACA
AGTATCAACCCAGCTGTCTCAAGTAGGAACAGTTCTCTATGTCAGTGGCGAGGAGTCTGCCCAGCAGATCAAGTTACGGG
CAGAGCGCTTGGGGGATATTGATAGTGAGTTTTATCTCTATGCTGAGACCAATATGCAAAGCGTGCGAGCCGAGGTGGAG
CGCCTCCAGCCTAACTTCCTCATCATCGACTCTATTCAGACCATTATGTCTCCGGAGATTTCAGGGGTGCAGGGATCGGT
TTCTCAGGTGCGGGAAGTGACGGCTGAGCTCATGCAACTGGCCAAAACCAATAACATCGCCATCTTCATCGTCGGCCATG
TGACTAAGGAAGGAACCTTGGCGGGCCCGCGTATGTTGGAGCACATGGTGGATACGGTGCTCTACTTTGAAGGGGAACGC
CACCATACCTTCCGGATCCTGAGAGCGGTCAAGAACCGCTTTGGCTCGACCAATGAGATTGGAATCTTTGAGATGCAATC
AGGTGGGCTGGTCGAAGTCCTCAATCCCAGTCAGGTCTTTCTAGAAGAACGTTTGGATGGCGCTACTGGCTCTGCCATTG
TCGTCACCATGGAAGGAAGCAGACCAATCTTGGCGGAAGTTCAGGCCTTGGTGACACCGACTGTATTTGGAAATGCCAAG
CGGACGACAACGGGTCTGGACTTTAACCGGGTTAGTCTCATTATGGCCGTATTAGAGAAACGTTGCGGACTTCTTCTCCA
AAATCAGGATGCCTATCTCAAGTCAGCTGGTGGTGTCAAACTGGACGAACCAGCCATTGACTTAGCCGTAGCGGTGGCCA
TTGCTTCTAGCTACAAGGATCTTCCAACCAATCCTCAAGAGGCCTTTATCGGTGAGATTGGCTTGACTGGGGAGATTCGT
CGCGTGACTCGGATTGAGCAGCGGATTAACGAAGCGGCCAAACTTGGTTTCACTAAGATTTATGCGCCAAAAAATTCTCT
CCAAGGGATCACGATCCCAAATGGCATTCAAGTGATAGCGGTCTCTACTGTAGGAGAAGTTTTGAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(65-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

94.04

100

0.94
  radA Streptococcus pneumoniae D39

94.04

100

0.94
  radA Streptococcus pneumoniae R6

94.04

100

0.94
  radA Streptococcus pneumoniae TIGR4

94.04

100

0.94
  radA Streptococcus mitis SK321

94.04

100

0.94
  radA Streptococcus mitis NCTC 12261

93.819

100

0.938
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629

Multiple sequence alignment