Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOKI128_RS06855 Genome accession   NZ_CP006822
Coordinates   1443059..1444372 (+) Length   437 a.a.
NCBI ID   WP_025288617.1    Uniprot ID   -
Organism   Helicobacter pylori oki128     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1438059..1449372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI128_RS07900 (HPOKI128_07070) - 1438074..1438298 (+) 225 Protein_1316 type II restriction endonuclease -
  HPOKI128_RS06835 (HPOKI128_07075) crdR 1438385..1439026 (+) 642 WP_025223242.1 copper response regulator transcription factor CrdR -
  HPOKI128_RS06840 (HPOKI128_07080) crdS 1438992..1440194 (+) 1203 WP_080275473.1 copper-sensing histidine kinase CrdS -
  HPOKI128_RS06845 (HPOKI128_07085) - 1440197..1441591 (+) 1395 WP_025288615.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOKI128_RS06850 (HPOKI128_07090) - 1441602..1443062 (+) 1461 WP_025288616.1 replicative DNA helicase -
  HPOKI128_RS06855 (HPOKI128_07095) comEC/comE3 1443059..1444372 (+) 1314 WP_025288617.1 ComEC/Rec2 family competence protein Machinery gene
  HPOKI128_RS06860 (HPOKI128_07100) mqnP 1444443..1445285 (+) 843 WP_235180477.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOKI128_RS06865 (HPOKI128_07105) - 1445278..1445772 (+) 495 WP_015428501.1 hypothetical protein -
  HPOKI128_RS06870 (HPOKI128_07110) - 1445785..1446288 (+) 504 WP_000953085.1 DUF6115 domain-containing protein -
  HPOKI128_RS06875 (HPOKI128_07115) - 1446285..1447088 (+) 804 WP_025288619.1 phosphatidylserine decarboxylase -
  HPOKI128_RS06880 (HPOKI128_07120) nadA 1447078..1448088 (+) 1011 WP_025288620.1 quinolinate synthase NadA -
  HPOKI128_RS06885 (HPOKI128_07125) nadC 1448088..1448909 (+) 822 WP_025288621.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50228.19 Da        Isoelectric Point: 9.8696

>NTDB_id=114175 HPOKI128_RS06855 WP_025288617.1 1443059..1444372(+) (comEC/comE3) [Helicobacter pylori oki128]
MKDKTFQGAFELLTTPKEYLLYGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIITHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLAIPTISVFSPLWLLGAHLFLM
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=114175 HPOKI128_RS06855 WP_025288617.1 1443059..1444372(+) (comEC/comE3) [Helicobacter pylori oki128]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTATGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCTTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGTGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTACGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGTATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGCGCATTTATTTTTAATG
ATTCTAAGCGCACGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment