Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPOKI128_RS06415 | Genome accession | NZ_CP006822 |
| Coordinates | 1349184..1349759 (+) | Length | 191 a.a. |
| NCBI ID | WP_025288557.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki128 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1344184..1354759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI128_RS06390 (HPOKI128_06605) | uvrD | 1344875..1346920 (+) | 2046 | WP_025288554.1 | DNA helicase UvrD | - |
| HPOKI128_RS06395 (HPOKI128_06610) | flgA | 1346917..1347573 (+) | 657 | WP_025288555.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPOKI128_RS06400 (HPOKI128_06615) | - | 1347583..1348146 (+) | 564 | WP_000780124.1 | UbiX family flavin prenyltransferase | - |
| HPOKI128_RS06405 (HPOKI128_06620) | coaD | 1348146..1348619 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| HPOKI128_RS06410 (HPOKI128_06625) | tmk | 1348621..1349196 (+) | 576 | WP_025288556.1 | dTMP kinase | - |
| HPOKI128_RS06415 (HPOKI128_06630) | comFC | 1349184..1349759 (+) | 576 | WP_025288557.1 | ComF family protein | Machinery gene |
| HPOKI128_RS06420 | - | 1349792..1351831 (+) | 2040 | WP_025288558.1 | class I SAM-dependent DNA methyltransferase | - |
| HPOKI128_RS06425 | - | 1351828..1353090 (+) | 1263 | WP_025288559.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21230.81 Da Isoelectric Point: 9.2800
>NTDB_id=114173 HPOKI128_RS06415 WP_025288557.1 1349184..1349759(+) (comFC) [Helicobacter pylori oki128]
MHCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNAKAHFAIALCSADE
MHCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNAKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=114173 HPOKI128_RS06415 WP_025288557.1 1349184..1349759(+) (comFC) [Helicobacter pylori oki128]
ATGCATTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTGAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACGCAAAAGCGCACTTTGCAATCGCGCTTTG
TAGCGCGGATGAATGA
ATGCATTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTGAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACGCAAAAGCGCACTTTGCAATCGCGCTTTG
TAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |