Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   DQL20_RS02440 Genome accession   NZ_LS483444
Coordinates   434014..434745 (+) Length   243 a.a.
NCBI ID   WP_006596885.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC13166     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 429014..439745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS02410 (NCTC11371_00477) - 429468..430889 (+) 1422 WP_006596891.1 NCS2 family permease -
  DQL20_RS02415 (NCTC11371_00478) tsaE 431013..431462 (+) 450 WP_006596890.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL20_RS02420 (NCTC11371_00479) - 431465..431998 (+) 534 WP_006596889.1 GNAT family N-acetyltransferase -
  DQL20_RS02425 (NCTC11371_00480) brpA 431995..433164 (+) 1170 WP_006596888.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL20_RS02430 (NCTC11371_00481) - 433223..433519 (-) 297 WP_006596887.1 hypothetical protein -
  DQL20_RS02435 (NCTC11371_00482) - 433533..433946 (-) 414 WP_006596886.1 HIT family protein -
  DQL20_RS02440 (NCTC11371_00483) pptA 434014..434745 (+) 732 WP_006596885.1 ABC transporter ATP-binding protein Regulator
  DQL20_RS02445 (NCTC11371_00484) - 434742..435797 (+) 1056 WP_006596884.1 ABC transporter permease -
  DQL20_RS02450 (NCTC11371_00485) ccrZ 435838..436632 (+) 795 WP_040803298.1 cell cycle regulator CcrZ -
  DQL20_RS02455 (NCTC11371_00486) trmB 436629..437264 (+) 636 WP_006596882.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL20_RS02460 (NCTC11371_00487) rimP 437429..437917 (+) 489 WP_325167126.1 ribosome maturation factor RimP -
  DQL20_RS02465 (NCTC11371_00488) nusA 437963..439108 (+) 1146 WP_006596880.1 transcription termination factor NusA -
  DQL20_RS02470 (NCTC11371_00489) rnpM 439119..439415 (+) 297 WP_006596879.1 RNase P modulator RnpM -
  DQL20_RS02475 (NCTC11371_00490) - 439408..439707 (+) 300 WP_006596878.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26957.31 Da        Isoelectric Point: 4.6375

>NTDB_id=1141729 DQL20_RS02440 WP_006596885.1 434014..434745(+) (pptA) [Streptococcus australis strain NCTC13166]
MLEIKNLTGGYVNIPVLKDVSFEVGDGQLIGLIGLNGAGKSTTINEIIGLLRPYAGEIRIDGLTLATSPGAYRQKIGYIP
ETPSLYEELTLREHIETVAMAYDLDQEAVFARVTPLLKQFRLEEKLDWFPVHFSKGMKQKVMIICAFAVDPSLFIVDEPF
LGLDPVAISDLIQLLKVEKEKGKSILMSTHVLDSAEKMCDAFVILHKGQVRAQGTLEDLRTEFGMADADLNEIYLALTKE
ADR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1141729 DQL20_RS02440 WP_006596885.1 434014..434745(+) (pptA) [Streptococcus australis strain NCTC13166]
ATGTTAGAAATAAAAAACCTGACAGGAGGCTATGTCAATATCCCTGTCTTAAAAGATGTTAGTTTTGAGGTTGGTGATGG
TCAATTAATTGGATTGATTGGCTTGAATGGAGCAGGGAAATCAACGACCATTAATGAAATAATTGGCCTATTGCGTCCCT
ATGCTGGCGAAATCCGGATCGACGGTTTGACTTTAGCTACTTCTCCAGGTGCTTATCGCCAAAAAATTGGTTATATTCCT
GAAACACCGAGCCTTTATGAAGAGTTAACCCTGCGTGAGCATATTGAGACAGTAGCGATGGCCTATGACTTGGATCAGGA
AGCAGTTTTTGCGCGTGTGACTCCTCTCTTGAAGCAATTCCGACTAGAGGAAAAATTGGATTGGTTTCCTGTCCATTTTT
CTAAGGGGATGAAACAAAAGGTCATGATTATTTGTGCCTTTGCTGTTGATCCAAGTTTGTTTATTGTCGACGAGCCTTTC
TTAGGTTTGGATCCAGTTGCGATCTCAGATTTAATTCAATTATTGAAGGTGGAAAAAGAGAAGGGAAAATCTATTTTAAT
GAGTACCCATGTGCTGGATTCTGCTGAAAAAATGTGCGATGCCTTTGTCATCCTCCATAAGGGACAGGTCCGTGCTCAGG
GGACTTTAGAGGATTTGCGGACAGAATTTGGAATGGCAGATGCCGATTTGAATGAGATTTACCTTGCACTAACAAAAGAG
GCGGACCGATGA

Domains


Predicted by InterproScan.

(17-160)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

98.354

0.745

  pptA Streptococcus thermophilus LMD-9

74.895

98.354

0.737


Multiple sequence alignment