Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DQN58_RS06505 Genome accession   NZ_LS483443
Coordinates   1316091..1318520 (-) Length   809 a.a.
NCBI ID   WP_006717932.1    Uniprot ID   E6KXA1
Organism   Aggregatibacter segnis ATCC 33393 strain NCTC 10977     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1311091..1323520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN58_RS06485 (NCTC10977_01302) kdsB 1312338..1313111 (-) 774 WP_006717922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DQN58_RS06490 (NCTC10977_01303) - 1313113..1313292 (-) 180 WP_006717924.1 Trm112 family protein -
  DQN58_RS06495 (NCTC10977_01304) lpxK 1313299..1314279 (-) 981 WP_006717927.1 tetraacyldisaccharide 4'-kinase -
  DQN58_RS06500 (NCTC10977_01305) msbA 1314298..1316046 (-) 1749 WP_032998121.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DQN58_RS06505 (NCTC10977_01306) rec2 1316091..1318520 (-) 2430 WP_006717932.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQN58_RS06510 (NCTC10977_01307) dksA 1318813..1319250 (+) 438 WP_006717934.1 RNA polymerase-binding protein DksA -
  DQN58_RS06515 (NCTC10977_01308) pcnB 1319366..1320823 (+) 1458 WP_006717936.1 polynucleotide adenylyltransferase PcnB -
  DQN58_RS06520 (NCTC10977_01309) folK 1320816..1321322 (+) 507 WP_006717939.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 92092.54 Da        Isoelectric Point: 9.4916

>NTDB_id=1141696 DQN58_RS06505 WP_006717932.1 1316091..1318520(-) (rec2) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
MGVSLDKFAGSLIVSGITLVFLPDRFLVSWQTALYLSLLLCPLILLARGLSCHKTKYSLLWLLLFTLNLAYVHQPAIQLL
NQADNIAHLPKTIHTEFIVEEILHQQQYQTLILRAKLADNRPEQRLYANWKLKQNVNIGERYVGDLRLRPISSRLNKDGF
DRQQWYFSKRITAWAEVKSAVKIEQFFSWRQTALHQARQQIENLSQQGLLLALGFGERAWLENATWQIYQKTNTAHLIAI
SGLHIGLAMMLGFALARLLQFTFPTHYITPTFPIFCGMILALLYSQLAGLAIPTLRAIIALALLYAIQHLRLHWTVWQLL
LRVVALLIFIDPLILLSTSFWLSVGAVTCLIVWYQCFPLSLLHWRGKPLTHTHWRKVRYVFGLFHLQLGLLWLFTPIQLF
FFNGISLNSFITNLIAVPLYSFILVPLVLFAVLTQGSWNTWWLANDLAEKITALLAPLQDHWLAISIPHSLWITLVLTCL
FLGLLYYVYKPQKPLSSTLELAKLTRLKGFHLAAERTLSFPLQKTIYGLGCGLIVFCNTTLAHHYLSRPNWQLDTLDVGQ
GLATLIVKDGKGVLYDTGSSWEGGSMAQLEILPYLQRQGIQLEWLILSHDDNDHSGGARAMLAAYPDIQLTTASQKRYGE
KNTEENDRTFCLANKQWTWQGLHFTVLSPNNIVSRAENPDSCTLLLTDGKYNILLTGDADLSVEYKILPKLDKIHVLQVG
HHGSKTSTGEALVRHTQPDIALISSGRWNPWHFPNGDVMARLKQQGTQSYNTAETGQITLLFHENKIEIQTARAEFSPWY
RRLIGLKGK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=1141696 DQN58_RS06505 WP_006717932.1 1316091..1318520(-) (rec2) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
GTGGGTGTTTCGTTAGATAAATTTGCGGGAAGTTTAATTGTAAGCGGTATCACTTTGGTGTTTTTACCCGATAGGTTTTT
AGTCTCTTGGCAAACGGCACTTTATTTATCCCTTCTTTTATGTCCGCTCATTTTGCTTGCCCGAGGTTTATCCTGTCATA
AAACGAAATACTCGCTTCTTTGGCTACTTTTGTTCACGCTCAATCTGGCTTATGTACATCAGCCGGCAATACAGTTGCTG
AACCAAGCGGACAACATTGCCCATTTGCCGAAAACTATTCATACCGAATTTATCGTGGAAGAGATCCTACATCAGCAACA
ATATCAAACCTTAATCCTCCGTGCGAAGCTCGCGGATAACCGGCCGGAACAACGTCTCTACGCCAATTGGAAACTTAAAC
AAAACGTGAATATTGGTGAACGTTATGTGGGAGACTTACGCCTACGCCCTATATCTTCTCGACTCAATAAGGATGGTTTT
GATCGGCAACAATGGTACTTCAGTAAACGCATCACTGCGTGGGCAGAAGTGAAAAGTGCGGTCAAAATAGAACAGTTTTT
TTCGTGGCGACAAACGGCGTTACATCAGGCAAGACAACAAATAGAAAATTTATCTCAACAAGGGTTGTTATTGGCTCTAG
GTTTTGGCGAACGGGCATGGCTCGAAAACGCCACATGGCAAATTTATCAAAAAACTAACACAGCACACTTGATTGCTATT
TCAGGATTACATATCGGTCTGGCGATGATGTTAGGCTTTGCCTTGGCGCGCTTACTCCAATTTACGTTTCCAACCCATTA
CATCACCCCAACCTTTCCAATTTTCTGCGGCATGATTTTAGCCCTGCTTTATAGTCAACTTGCAGGACTGGCAATCCCCA
CGCTACGCGCCATAATTGCCCTCGCTTTACTCTACGCTATTCAGCATTTAAGACTGCATTGGACAGTGTGGCAACTGTTA
TTGCGAGTGGTCGCACTACTGATTTTTATCGATCCGCTCATATTGCTTTCCACCAGTTTTTGGCTATCAGTGGGCGCAGT
CACCTGTTTAATTGTTTGGTATCAATGTTTCCCGCTGTCCTTATTACACTGGCGCGGCAAGCCGCTTACTCATACTCACT
GGAGAAAAGTGCGGTATGTTTTCGGTTTATTTCATTTGCAACTTGGTTTGCTTTGGTTATTCACGCCGATTCAATTGTTC
TTTTTTAATGGCATTTCCTTAAACAGTTTTATTACCAATCTTATTGCCGTGCCACTTTATAGCTTCATTTTAGTACCGTT
GGTACTGTTTGCTGTGCTCACCCAAGGCAGCTGGAATACATGGTGGCTTGCCAATGATCTGGCAGAAAAAATCACCGCAC
TTTTAGCCCCGTTGCAGGATCATTGGCTGGCTATTTCTATTCCCCACAGTTTATGGATTACGCTTGTTTTAACCTGCCTG
TTTTTAGGCTTGCTATATTACGTTTATAAACCCCAGAAACCTCTCTCTTCTACATTGGAATTAGCAAAACTCACTCGTTT
AAAGGGATTTCACCTCGCTGCTGAACGCACCTTAAGCTTTCCCTTACAAAAGACAATTTACGGGTTAGGTTGCGGATTGA
TTGTTTTTTGCAACACTACATTAGCGCACCACTACCTTTCCCGCCCAAATTGGCAATTGGATACCTTAGATGTGGGGCAA
GGGCTAGCCACCTTGATCGTGAAAGATGGCAAAGGCGTGCTATACGACACTGGCTCGAGTTGGGAAGGCGGCAGTATGGC
GCAGTTAGAAATTCTGCCTTATTTACAGCGACAAGGCATTCAGTTGGAATGGCTGATTTTAAGCCATGATGACAACGATC
ATTCGGGCGGTGCTCGCGCGATGTTGGCCGCTTATCCCGACATTCAACTGACCACCGCTTCGCAAAAACGTTATGGCGAA
AAAAACACGGAAGAAAACGACCGCACTTTTTGCCTTGCCAACAAACAATGGACATGGCAGGGATTACACTTTACCGTACT
TTCTCCCAACAACATCGTGTCCCGTGCGGAAAATCCCGATTCCTGCACGCTGCTATTAACGGATGGTAAATACAATATTT
TACTAACAGGCGATGCCGATCTCAGCGTGGAATACAAAATTTTACCCAAGCTAGATAAAATCCACGTACTACAAGTGGGA
CACCATGGCAGCAAAACCTCGACAGGAGAGGCATTAGTGCGCCACACACAGCCGGATATAGCGTTAATCTCCAGCGGGCG
TTGGAATCCGTGGCATTTTCCGAACGGTGATGTGATGGCAAGGCTAAAACAGCAAGGTACGCAAAGTTACAATACGGCAG
AAACAGGTCAAATTACTTTATTATTTCATGAAAATAAAATAGAAATTCAAACTGCACGGGCGGAATTTTCGCCATGGTAT
CGCAGATTAATTGGCTTGAAGGGCAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-486)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)

Domain of unknown function (DUF4131) (DUF4131)

(30-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E6KXA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.679

96.91

0.511

Multiple sequence alignment