Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQN35_RS07080 Genome accession   NZ_LS483442
Coordinates   1374470..1375279 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8370     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369470..1380279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN35_RS07070 (NCTC8370_01404) smc 1369794..1373333 (-) 3540 WP_010921991.1 chromosome segregation protein SMC -
  DQN35_RS07075 (NCTC8370_01405) rnc 1373334..1374026 (-) 693 WP_002990670.1 ribonuclease III -
  DQN35_RS07080 (NCTC8370_01406) vicX 1374470..1375279 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQN35_RS07085 (NCTC8370_01407) vicK 1375283..1376635 (-) 1353 WP_002995609.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN35_RS07090 (NCTC8370_01408) vicR 1376628..1377338 (-) 711 WP_002985645.1 response regulator YycF Regulator
  DQN35_RS07095 (NCTC8370_01409) - 1377500..1378534 (-) 1035 WP_011285430.1 DUF3114 domain-containing protein -
  DQN35_RS07100 (NCTC8370_01410) - 1378590..1379837 (-) 1248 WP_010921989.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1141664 DQN35_RS07080 WP_002985641.1 1374470..1375279(-) (vicX) [Streptococcus pyogenes strain NCTC8370]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1141664 DQN35_RS07080 WP_002985641.1 1374470..1375279(-) (vicX) [Streptococcus pyogenes strain NCTC8370]
ATGAATGAGAGTGGTTTTAAATACAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTAAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment