Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPOKI128_RS05830 Genome accession   NZ_CP006822
Coordinates   1221802..1222065 (+) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori oki128     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216802..1227065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI128_RS05805 (HPOKI128_06005) groES 1217098..1217454 (-) 357 WP_000671954.1 co-chaperone GroES -
  HPOKI128_RS05810 (HPOKI128_06010) dnaG 1217730..1219409 (+) 1680 WP_025288474.1 DNA primase -
  HPOKI128_RS05815 (HPOKI128_06015) - 1219406..1220458 (+) 1053 WP_025288475.1 MnmA/TRMU family protein -
  HPOKI128_RS05820 (HPOKI128_06020) - 1220549..1221376 (+) 828 WP_025288476.1 DUF5718 family protein -
  HPOKI128_RS05825 (HPOKI128_06025) comB2 1221521..1221802 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPOKI128_RS05830 (HPOKI128_06030) comB3 1221802..1222065 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  HPOKI128_RS05835 (HPOKI128_06035) - 1222067..1224433 (+) 2367 Protein_1123 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPOKI128_RS05840 (HPOKI128_06040) - 1224756..1226096 (+) 1341 Protein_1124 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=114166 HPOKI128_RS05830 WP_000584953.1 1221802..1222065(+) (comB3) [Helicobacter pylori oki128]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=114166 HPOKI128_RS05830 WP_000584953.1 1221802..1222065(+) (comB3) [Helicobacter pylori oki128]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCCTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment