Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DQN45_RS01915 Genome accession   NZ_LS483438
Coordinates   387950..388246 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain NCTC12975     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382950..393246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN45_RS09340 (NCTC12975_00380) - 384482..384685 (+) 204 WP_241960542.1 PT domain-containing protein -
  DQN45_RS09345 - 384609..385020 (+) 412 Protein_361 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DQN45_RS01905 (NCTC12975_00381) - 385228..387504 (+) 2277 WP_241960543.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DQN45_RS01910 (NCTC12975_00382) - 387775..387957 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  DQN45_RS01915 (NCTC12975_00383) HI0659 387950..388246 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  DQN45_RS01920 (NCTC12975_00384) - 388430..390346 (+) 1917 WP_042594001.1 ABC transporter ATP-binding protein -
  DQN45_RS01925 (NCTC12975_00385) - 390356..390892 (+) 537 WP_042594000.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  DQN45_RS01930 (NCTC12975_00386) - 390908..391459 (+) 552 WP_042593999.1 Sua5/YciO/YrdC/YwlC family protein -
  DQN45_RS01935 (NCTC12975_00387) aroE 391463..392281 (+) 819 WP_042593998.1 shikimate dehydrogenase -
  DQN45_RS01940 (NCTC12975_00388) - 392278..392835 (+) 558 WP_042593997.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=1141546 DQN45_RS01915 WP_005650837.1 387950..388246(+) (HI0659) [Haemophilus influenzae strain NCTC12975]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1141546 DQN45_RS01915 WP_005650837.1 387950..388246(+) (HI0659) [Haemophilus influenzae strain NCTC12975]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment