Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DQN45_RS00275 Genome accession   NZ_LS483438
Coordinates   57162..57878 (-) Length   238 a.a.
NCBI ID   WP_042593718.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12975     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52162..62878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN45_RS00255 (NCTC12975_00051) nrdR 52269..52718 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  DQN45_RS00260 (NCTC12975_00052) recC 52773..56138 (-) 3366 WP_042593721.1 exodeoxyribonuclease V subunit gamma -
  DQN45_RS00265 (NCTC12975_00053) comQ 56184..56471 (-) 288 WP_042593720.1 DUF5374 domain-containing protein Machinery gene
  DQN45_RS00270 (NCTC12975_00054) comP 56464..57147 (-) 684 WP_042593719.1 DUF2572 family protein Machinery gene
  DQN45_RS00275 (NCTC12975_00055) comO 57162..57878 (-) 717 WP_042593718.1 type II secretion system protein J Machinery gene
  DQN45_RS00280 (NCTC12975_00056) comN 57878..58390 (-) 513 WP_013526183.1 type II secretion system protein Machinery gene
  DQN45_RS00285 (NCTC12975_00057) suhB 58590..59393 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  DQN45_RS00290 (NCTC12975_00058) nrfE 59502..61409 (+) 1908 WP_042593717.1 heme lyase NrfEFG subunit NrfE -
  DQN45_RS00295 (NCTC12975_00059) - 61409..61939 (+) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26759.16 Da        Isoelectric Point: 9.6935

>NTDB_id=1141541 DQN45_RS00275 WP_042593718.1 57162..57878(-) (comO) [Haemophilus influenzae strain NCTC12975]
MMKVLLKGKTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1141541 DQN45_RS00275 WP_042593718.1 57162..57878(-) (comO) [Haemophilus influenzae strain NCTC12975]
ATGATGAAAGTATTATTAAAAGGGAAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACCTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment