Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOKI112_RS00430 Genome accession   NZ_CP006821
Coordinates   88026..89339 (+) Length   437 a.a.
NCBI ID   WP_025309547.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 83026..94339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS00410 (HPOKI112_00430) crdR 83340..83981 (+) 642 WP_025275480.1 copper response regulator transcription factor CrdR -
  HPOKI112_RS00415 (HPOKI112_00435) crdS 83947..85149 (+) 1203 WP_080276247.1 copper-sensing histidine kinase CrdS -
  HPOKI112_RS00420 (HPOKI112_00440) - 85152..86552 (+) 1401 WP_025309545.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOKI112_RS00425 (HPOKI112_00445) - 86563..88029 (+) 1467 WP_025309546.1 replicative DNA helicase -
  HPOKI112_RS00430 (HPOKI112_00450) comEC/comE3 88026..89339 (+) 1314 WP_025309547.1 ComEC/Rec2 family competence protein Machinery gene
  HPOKI112_RS00435 (HPOKI112_00455) mqnP 89410..90252 (+) 843 WP_235169399.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOKI112_RS00440 (HPOKI112_00460) - 90245..90739 (+) 495 WP_025276578.1 hypothetical protein -
  HPOKI112_RS00445 (HPOKI112_00465) - 90752..91258 (+) 507 WP_025276579.1 DUF6115 domain-containing protein -
  HPOKI112_RS00450 (HPOKI112_00470) - 91252..92055 (+) 804 WP_025309548.1 phosphatidylserine decarboxylase -
  HPOKI112_RS00455 (HPOKI112_00475) nadA 92045..93055 (+) 1011 WP_025309549.1 quinolinate synthase NadA -
  HPOKI112_RS00460 (HPOKI112_00480) nadC 93055..93876 (+) 822 WP_025309550.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50266.17 Da        Isoelectric Point: 9.7934

>NTDB_id=114146 HPOKI112_RS00430 WP_025309547.1 88026..89339(+) (comEC/comE3) [Helicobacter pylori oki112]
MKDKTFQGAFELLSTPKEYLVCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTENFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHLLNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=114146 HPOKI112_RS00430 WP_025309547.1 88026..89339(+) (comEC/comE3) [Helicobacter pylori oki112]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACCTGGTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAATGCACTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTATATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACGGAAAATTTTTTTAAAACCTCTTCTTTTTTGATGCGATCGTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCACC
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.652

100

0.957

Multiple sequence alignment