Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   DQN79_RS07680 Genome accession   NZ_LS483435
Coordinates   1512996..1516565 (-) Length   1189 a.a.
NCBI ID   WP_003770749.1    Uniprot ID   -
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1507996..1521565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS07660 (NCTC11050_01459) - 1509613..1510407 (-) 795 WP_003770738.1 ABC transporter ATP-binding protein -
  DQN79_RS07665 (NCTC11050_01460) - 1510404..1511309 (-) 906 WP_003770739.1 ABC transporter permease -
  DQN79_RS07670 (NCTC11050_01461) - 1511519..1512544 (-) 1026 WP_041961371.1 ABC transporter substrate-binding protein -
  DQN79_RS07675 (NCTC11050_01462) - 1512645..1512917 (-) 273 WP_003770747.1 accessory factor UbiK family protein -
  DQN79_RS07680 (NCTC11050_01463) recB 1512996..1516565 (-) 3570 WP_003770749.1 exodeoxyribonuclease V subunit beta Machinery gene
  DQN79_RS07685 (NCTC11050_01464) greB 1516707..1517195 (+) 489 WP_003770752.1 transcription elongation factor GreB -
  DQN79_RS07690 (NCTC11050_01465) - 1517275..1517655 (-) 381 WP_003770755.1 WG repeat-containing protein -
  DQN79_RS07695 (NCTC11050_01466) - 1517818..1518678 (-) 861 WP_003770757.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  DQN79_RS07705 (NCTC11050_01467) - 1518881..1520200 (-) 1320 WP_041961372.1 DUF445 domain-containing protein -
  DQN79_RS07710 (NCTC11050_01468) pgeF 1520674..1521462 (-) 789 WP_041961373.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 1189 a.a.        Molecular weight: 133249.77 Da        Isoelectric Point: 6.2111

>NTDB_id=1141406 DQN79_RS07680 WP_003770749.1 1512996..1516565(-) (recB) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MSRSILPFDPLTVPVQGTALIEASAGTGKTYGIAALFARLILLEKLPVDKVLVVTFTKAATAELKTRLRGRLDEAFRRIR
GDKMDEEADGFMRGLLEQAARQETPERLELRLKAALSQFDNAAIYTIHGFCQRLLGDYAFLCQVPFETSSADDNDKRELN
TYAQDFWRQNVSHDAQNARLAFHADLTPDQVLQQFSRYLGRPDLLFRRPQTDLAAETERTQAVWTELQQRFPELKDLFWR
VHPMLNGNKFRKTTYEAKLAELEKLLQQTAMPAKWLETNLGNTNGESVFSADYLTATVKKGHTAPEADLAALSFLHKVRT
AASALLDAEQQALIALQLDCLQYVRRTAAEQRATRQERSPDDLLLDVYHALTAGAHRDKLAEAVSQNWRVALIDEFQDTD
PLQYEIFRRTFAAHGNPLFLVGDPKQAIYGFRGADIYAYLQAAADTPVHYTLAHNYRSHSLLIDNIGRLFQQKERPFVLE
HIGYPAVTAPRGTSRLTPPQAALKIRWLNDGGEPDPNKETLRSRAAEYCADEIAALINQAAEGRLNYKNTPVEAGQIAVL
VHSHNQGAMIKRTLAERGIPSVSIERESVFAGEEAKALAALLGFWLEPRRTEPLRFILAGTLFGQTAEQLHALNRDEALL
SGYIAAAEDFLQIWQRQGIYAALTAFARRYGLEGRLLAADGGRTLTNFWQLAELLADENENSHTPAALHQWLLAKIQDPP
QNENAVLRLESDEALVKIVTIHASKGLQYPFVFCPFSWDTAEKKNEAWHILHRENGSELLADSQLDEADREQLDDEDLGE
RLRLLYVALTRAEEQLVIYAARCSSTPRNTFAYLLEGLPSDGRLKTRQAYEAEKENQAEMLRRNWLRWINAAPEGIEWQE
GAPLSAAVQTRRRSGTEYRAAVYPPRRFSFIRHTSFTGLTRHLGHGPTRPDDDDGLQPALDPAELSAGSLLPLPDTDNAP
RDIFHFPRGAAAGICLHEILEKHDFARPAGQQRENIAAILEKHGIETEWLDAVCLMADQTAVAPLHGGTTLSALPAARRK
AEMGFVMHFDRLELGRLKNHLAAAGLPEACTAAAERLDFPTLQGFLNGFIDLTCLLPDGTACIIDYKSNHLGMDTDGYAQ
SALDQAVADHHYYLQAWIYALAAARHLKQRGQIPRTVRIRYLFLRGLDSGSRNGIWSWDIPTASLAEWL

Nucleotide


Download         Length: 3570 bp        

>NTDB_id=1141406 DQN79_RS07680 WP_003770749.1 1512996..1516565(-) (recB) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGTCCCGCAGCATCCTCCCGTTCGACCCGCTGACCGTCCCCGTACAAGGCACCGCCTTAATCGAAGCCTCCGCCGGCAC
CGGCAAAACCTACGGCATCGCCGCCCTCTTCGCCCGCCTGATCCTGCTGGAAAAGCTGCCTGTGGACAAAGTGCTGGTGG
TTACCTTCACCAAAGCCGCCACCGCCGAACTGAAAACCCGCCTGCGCGGCCGTTTGGACGAAGCCTTCCGCCGGATACGC
GGCGACAAAATGGACGAAGAAGCCGACGGTTTCATGCGCGGCCTGCTCGAACAGGCGGCGCGGCAGGAAACGCCCGAACG
GCTGGAACTGCGCCTGAAAGCCGCGCTGTCGCAGTTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAACGCC
TGCTGGGCGACTACGCCTTTCTCTGCCAAGTGCCGTTTGAAACCTCCTCCGCCGACGACAACGACAAGCGCGAGTTGAAC
ACCTACGCGCAGGATTTCTGGCGGCAAAACGTGTCGCACGACGCGCAAAACGCCCGCCTCGCCTTTCATGCCGACCTCAC
GCCCGACCAGGTATTGCAACAGTTTTCCCGCTACCTCGGCCGCCCCGACCTGCTTTTCAGACGGCCTCAAACCGATTTGG
CCGCCGAAACGGAACGCACGCAGGCGGTTTGGACGGAACTGCAACAGCGTTTCCCCGAACTGAAAGACCTGTTTTGGCGG
GTGCATCCCATGTTGAACGGCAATAAATTCCGCAAAACCACCTACGAAGCCAAACTGGCCGAACTGGAAAAACTGCTGCA
ACAAACGGCGATGCCCGCAAAATGGCTGGAAACAAACCTGGGCAACACCAACGGGGAAAGCGTTTTTTCCGCCGACTACC
TGACCGCCACCGTCAAAAAAGGCCACACCGCCCCCGAAGCCGACCTGGCCGCACTGTCCTTCCTCCACAAAGTCCGAACC
GCAGCATCCGCCCTGCTCGATGCCGAACAACAGGCACTTATCGCCCTGCAGCTCGACTGCCTGCAATACGTCCGCCGCAC
CGCCGCCGAACAGCGGGCGACGCGGCAGGAACGCAGCCCCGACGACCTGCTGCTCGACGTTTACCACGCCCTCACCGCCG
GCGCGCACCGAGACAAACTCGCCGAAGCCGTCTCGCAAAACTGGCGCGTCGCCCTGATAGACGAATTCCAAGACACCGAC
CCGCTGCAATACGAAATCTTCCGCCGCACCTTTGCCGCTCACGGTAACCCGCTCTTCCTCGTCGGCGACCCCAAACAGGC
GATTTACGGCTTTCGCGGCGCGGACATCTACGCCTACCTCCAAGCCGCCGCCGACACCCCCGTCCACTATACCCTCGCGC
ACAACTACCGCAGCCACAGCCTGCTCATCGACAACATCGGCCGCCTGTTCCAACAGAAAGAACGCCCCTTCGTCCTCGAA
CACATCGGCTACCCGGCCGTTACCGCCCCGCGCGGGACAAGCCGCCTCACCCCGCCGCAGGCGGCATTGAAAATCCGCTG
GCTGAACGACGGCGGCGAACCCGACCCCAACAAAGAAACCCTCCGCAGCCGTGCCGCCGAATACTGCGCCGACGAAATCG
CCGCCCTGATCAACCAAGCGGCGGAAGGCCGTCTGAATTACAAAAACACCCCCGTGGAAGCGGGGCAAATCGCCGTTTTG
GTACACAGCCACAACCAAGGCGCGATGATAAAGCGCACCCTGGCCGAACGCGGCATCCCCAGCGTATCGATAGAGCGCGA
ATCCGTATTTGCCGGCGAAGAAGCCAAAGCCCTGGCCGCCCTGCTCGGCTTCTGGCTCGAACCGCGCCGCACCGAACCCC
TGCGCTTCATCCTCGCCGGCACCCTATTCGGCCAAACCGCCGAACAACTCCATGCCCTCAACCGCGACGAAGCCCTGCTG
TCCGGATACATCGCCGCCGCCGAAGATTTCCTGCAAATTTGGCAGCGGCAGGGCATCTACGCCGCCCTGACCGCCTTCGC
CCGCCGCTACGGCCTCGAAGGCCGCCTGCTGGCCGCAGACGGCGGACGCACCCTGACCAACTTCTGGCAGCTGGCCGAAC
TTTTGGCCGACGAAAACGAAAACAGCCACACCCCCGCCGCGCTGCACCAATGGCTGCTGGCCAAAATCCAAGACCCGCCC
CAAAACGAAAACGCCGTCCTACGGCTGGAAAGCGACGAGGCACTGGTCAAAATCGTAACCATCCATGCCTCCAAAGGCCT
GCAATATCCCTTCGTGTTCTGCCCGTTCTCCTGGGATACCGCCGAAAAGAAAAACGAAGCATGGCACATCCTCCACCGCG
AAAACGGCAGCGAACTGCTTGCCGACAGCCAGCTCGACGAAGCCGACCGCGAACAGCTCGACGACGAAGACCTGGGCGAA
CGCCTGCGCCTGCTCTACGTCGCCCTCACCCGCGCCGAAGAACAACTCGTCATCTATGCCGCCCGCTGCAGCAGCACCCC
GCGCAACACCTTTGCCTACCTACTCGAAGGCCTGCCTTCAGACGGCCGTCTGAAAACCCGCCAAGCCTACGAAGCCGAGA
AAGAAAACCAAGCCGAAATGCTGCGCCGCAACTGGCTGCGCTGGATAAACGCCGCCCCCGAAGGCATCGAATGGCAGGAA
GGCGCACCCCTTTCGGCAGCCGTGCAAACCCGCCGCCGCAGCGGCACCGAATACCGCGCCGCCGTTTACCCGCCGCGCCG
TTTCAGCTTCATCCGCCACACCAGCTTCACCGGCCTCACCCGCCATCTCGGCCACGGCCCGACCCGGCCCGATGACGACG
ACGGACTGCAACCCGCGCTCGACCCGGCCGAACTGTCCGCCGGTAGCCTTCTGCCGCTTCCCGATACGGACAACGCCCCG
CGCGACATCTTCCACTTTCCCCGTGGCGCGGCCGCCGGCATCTGCCTGCACGAAATCCTCGAAAAACACGACTTCGCCCG
CCCCGCCGGACAACAGCGCGAAAACATCGCCGCCATATTGGAAAAACACGGCATCGAAACCGAATGGCTGGATGCCGTCT
GCCTCATGGCAGACCAAACCGCCGTCGCACCGCTGCACGGCGGCACCACCCTCTCAGCCCTCCCCGCCGCCCGCCGCAAA
GCGGAAATGGGCTTCGTCATGCACTTCGACCGTTTGGAATTAGGCCGTCTGAAAAACCATCTGGCCGCAGCAGGCCTGCC
CGAAGCCTGCACCGCCGCCGCAGAACGGCTGGACTTCCCCACCCTGCAAGGCTTCCTCAACGGCTTCATCGACCTAACCT
GCCTGCTGCCCGACGGCACGGCCTGCATCATCGACTACAAATCCAACCACCTGGGCATGGACACCGACGGCTACGCCCAA
TCCGCCCTCGACCAAGCCGTCGCCGACCACCACTACTACCTCCAAGCCTGGATATACGCCCTTGCCGCCGCCCGCCACCT
CAAACAGCGCGGACAGATACCCCGCACCGTCCGCATCCGCTACCTTTTCCTGCGCGGACTCGATTCCGGCAGCCGCAACG
GCATCTGGTCGTGGGACATCCCCACCGCCTCACTGGCCGAATGGCTGTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(721-820)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-445)

UvrD-like helicase C-terminal domain (UvrD_C)

(450-633)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1060-1165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

51.071

100

0.521

Multiple sequence alignment