Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DQN79_RS07510 Genome accession   NZ_LS483435
Coordinates   1473778..1476966 (-) Length   1062 a.a.
NCBI ID   WP_041961365.1    Uniprot ID   A0A0B5CH15
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1468778..1481966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS07500 (NCTC11050_01427) - 1471897..1472700 (+) 804 WP_227717158.1 TatD family hydrolase -
  DQN79_RS07505 (NCTC11050_01428) - 1472949..1473719 (-) 771 WP_003771233.1 sulfite exporter TauE/SafE family protein -
  DQN79_RS07510 (NCTC11050_01429) recC 1473778..1476966 (-) 3189 WP_041961365.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DQN79_RS07515 (NCTC11050_01430) leuC 1477282..1478688 (-) 1407 WP_003771224.1 3-isopropylmalate dehydratase large subunit -
  DQN79_RS07520 (NCTC11050_01431) gshA 1478910..1480247 (+) 1338 WP_003771222.1 glutamate--cysteine ligase -
  DQN79_RS07525 (NCTC11050_01432) - 1480469..1481179 (+) 711 WP_003771217.1 class I SAM-dependent methyltransferase -
  DQN79_RS07530 (NCTC11050_01433) - 1481184..1481738 (+) 555 WP_003771213.1 hypothetical protein -

Sequence

Protein


Download         Length: 1062 a.a.        Molecular weight: 119153.19 Da        Isoelectric Point: 5.1039

>NTDB_id=1141404 DQN79_RS07510 WP_041961365.1 1473778..1476966(-) (recC) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MLHLYQSNRLEDLAELLWKIQESSPLSDPLQEEEILVQSQGMRRFIEHALAKSGGIAANLRFSLPAGFNWRLMRELLPGI
PELSPFNTEVMRWRLLELFFSDGLSASEYSAARQALSAYLSGGSVAAYQLAGQLADIFDQYLVYRPDWIDAWQNGRLIGL
GEDEIWQAELWRFLDDGRQIAPHRVALWHKLLDALSAPGAKLPERLFVFGIATLAPMYLQLLQAVAQHSEVHIFALNPAA
EYWGNIIEPAQMLQNPDDTDLSQTGHPLLASLGKQGRDFFNALTESELHTDLQVYADEPLSDGLLHRLQYDIQTLSLPDG
TAALDDSIRIVCAHSPLRELQILKEHLLQQFDCRPDLQPHDIAVLTPDIEPYVPFIEAVFGEQSGRPLPYSVSDVKLSRR
RPLLHALEQVLELFDSRFEADKVTALLDSEPVLTRFGLTREDLPLLHDTIASLNIHWGLDAEMRDGADPLFTWQQGLDRL
ALGWLLPYGGGLWQGISPWHTDPGHTAVLSRFAAFIRRLAHWRQIWMQPENIGGWTERVRKLAGELFTPTEDDGQSVRQL
EQALARWHQEAELAGFGGKLPYSVINLHLARFLGSQSETGFLRGGITFCSMVPMRSLPFKTICLLGLNDGLFPRNTRAAA
FDLIARHPKKGDRARRDDDRYLFLESLISAREHLYLSYVGRSIRTNEALAPSALLNELADCIADMTGKSTAELYAGQIEQ
HPLQAFSTRYFDGGSLSSSRQDYADALNRPSETRPPFYTRPLEDGEPPLSVSQNELTTFWKNPVKHWLRHTLDWQPPYLE
EADSAGEPFAPPKSREITAAYLQARREHRDFADTAAELTAQSMLPAGQLGTLWRANFETAAKSLEQEILDSPKLPAAPYE
YLSDGLTLHGSLTALHLHGQIHFLDHRPNAPEKIGLYLQHLIYNTVRPAGSGDFSSRWVLPDEILTLPPVPAGHAAEILN
GWLAYYLIGQTRPLPFFPKTSLAAAQTLLSESKKSEDEKLQAARKAAATHYFGGKMNVGQADYAEVALVFGKDETPPIES
ELFWLLIENLLLPTLSALQEAV

Nucleotide


Download         Length: 3189 bp        

>NTDB_id=1141404 DQN79_RS07510 WP_041961365.1 1473778..1476966(-) (recC) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGCTCCACCTCTACCAATCCAACCGCCTCGAAGACCTTGCCGAACTATTGTGGAAAATACAGGAAAGCAGCCCGCTGTC
CGACCCGTTGCAGGAAGAGGAAATACTGGTGCAAAGCCAAGGCATGCGCCGCTTTATCGAACACGCGCTGGCCAAAAGCG
GCGGCATTGCGGCCAACCTCCGCTTCTCGCTGCCGGCCGGCTTCAACTGGCGGCTGATGCGCGAACTGCTGCCGGGCATT
CCCGAACTCAGCCCGTTCAACACCGAAGTGATGCGCTGGCGGCTGTTGGAGCTGTTTTTTTCAGACGGCCTTTCCGCCTC
CGAATATTCCGCCGCGCGGCAGGCGTTGTCGGCCTACCTCTCCGGCGGCAGCGTCGCCGCCTACCAGCTCGCCGGACAGC
TTGCCGATATTTTCGACCAATATCTGGTTTACCGCCCCGACTGGATCGATGCCTGGCAAAACGGCCGCCTGATCGGCCTG
GGCGAAGACGAAATCTGGCAGGCCGAACTGTGGCGTTTCCTCGACGACGGCAGGCAAATCGCACCGCACCGCGTCGCCCT
TTGGCACAAACTGCTCGACGCACTCTCCGCGCCCGGAGCCAAGCTGCCCGAGCGGCTGTTCGTATTCGGCATCGCCACAC
TCGCCCCCATGTACCTTCAACTGTTGCAGGCCGTCGCGCAGCACAGCGAAGTACACATCTTCGCCCTCAATCCGGCGGCC
GAATACTGGGGCAACATCATCGAACCGGCGCAAATGCTGCAAAACCCCGACGACACCGATTTGAGCCAAACCGGCCACCC
CCTGCTCGCCTCGCTGGGCAAACAGGGGCGAGACTTCTTCAACGCCCTGACCGAAAGCGAACTGCATACCGATCTGCAAG
TGTACGCCGACGAACCGCTTTCAGACGGCCTCCTCCACCGCCTGCAGTACGACATCCAAACCCTCTCCCTGCCGGACGGC
ACGGCCGCTCTCGACGACAGCATCCGCATCGTCTGCGCCCACAGCCCGCTGCGCGAACTGCAAATCCTCAAAGAACACCT
GCTCCAACAGTTCGACTGCCGTCCCGACCTGCAACCCCACGACATCGCCGTCCTCACGCCCGACATCGAACCCTACGTCC
CCTTTATCGAAGCCGTCTTCGGCGAACAAAGCGGACGGCCGCTGCCTTATTCCGTATCCGACGTCAAACTCAGCCGCCGC
CGTCCCCTGCTCCACGCACTGGAACAAGTGCTGGAACTGTTTGACAGCCGCTTCGAAGCCGACAAAGTAACCGCCCTGCT
CGACAGCGAACCCGTCCTCACCCGTTTCGGACTGACCCGCGAAGACCTCCCCCTGCTGCACGACACCATCGCAAGCCTCA
ACATCCACTGGGGGCTGGACGCGGAAATGCGCGACGGCGCAGACCCCCTGTTCACCTGGCAGCAAGGGCTCGACCGGCTC
GCCCTCGGCTGGCTGCTGCCCTACGGCGGCGGCCTGTGGCAAGGCATCAGCCCGTGGCACACCGACCCCGGCCACACCGC
CGTCCTCAGCCGTTTCGCCGCCTTCATCCGCCGCCTCGCCCATTGGCGGCAGATATGGATGCAGCCCGAAAACATCGGCG
GCTGGACGGAACGCGTCCGCAAGCTGGCCGGCGAACTCTTCACCCCCACGGAAGACGACGGCCAATCCGTGCGGCAGCTC
GAACAGGCACTCGCCCGCTGGCATCAGGAAGCCGAACTGGCCGGATTCGGCGGCAAACTGCCTTATTCCGTCATCAACCT
CCACCTCGCCCGCTTCCTCGGCAGCCAAAGCGAAACCGGCTTTTTGCGCGGCGGCATCACCTTCTGCAGCATGGTACCCA
TGCGCTCCCTGCCCTTCAAAACCATCTGCCTGCTCGGCCTCAACGACGGCCTATTCCCCCGCAACACCCGCGCCGCCGCC
TTCGACCTTATCGCCCGCCACCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTCTTCCTCGAATCCCT
CATCAGCGCGCGCGAACACCTCTACCTCTCCTACGTCGGCCGCAGTATCCGCACCAACGAGGCCCTCGCTCCTTCCGCCC
TGCTAAACGAATTGGCCGACTGCATCGCCGACATGACCGGCAAAAGCACCGCCGAACTCTACGCAGGCCAAATCGAACAA
CACCCCCTGCAAGCCTTCTCCACCCGCTACTTCGACGGCGGCAGCCTGAGCAGCAGCCGCCAAGACTACGCCGACGCACT
CAACAGGCCGTCTGAAACACGCCCGCCCTTCTACACCCGCCCCCTGGAAGACGGCGAACCGCCGTTGTCCGTCAGCCAAA
ACGAACTGACCACCTTCTGGAAAAACCCGGTCAAACACTGGCTGCGGCACACACTCGACTGGCAGCCCCCCTACCTCGAA
GAAGCGGATAGCGCGGGCGAACCCTTCGCCCCGCCCAAAAGCCGCGAAATCACCGCCGCCTACCTGCAGGCCCGGCGCGA
ACACCGCGACTTCGCCGACACCGCCGCCGAACTGACCGCGCAATCCATGCTGCCCGCCGGCCAACTCGGCACACTCTGGC
GCGCCAACTTCGAAACCGCCGCCAAATCACTGGAACAAGAAATCCTCGACAGCCCGAAACTGCCCGCCGCCCCCTACGAA
TACCTTTCAGACGGCCTCACCCTGCACGGCAGCCTGACCGCACTGCACCTGCACGGCCAAATCCACTTCCTCGACCACCG
GCCCAACGCCCCCGAAAAAATCGGCCTCTACCTGCAACACCTGATTTACAACACCGTCCGCCCCGCAGGCAGCGGAGACT
TCTCCAGCCGCTGGGTGCTGCCCGACGAAATCCTCACCCTGCCCCCCGTACCCGCCGGCCACGCCGCAGAAATCCTCAAC
GGCTGGCTGGCCTACTACCTCATCGGCCAAACCCGCCCGCTGCCCTTTTTCCCCAAAACCAGCCTCGCCGCCGCGCAAAC
CCTGCTGTCCGAAAGCAAAAAAAGCGAAGACGAAAAGCTGCAGGCCGCCCGAAAAGCCGCCGCAACCCACTACTTCGGCG
GCAAAATGAACGTCGGCCAAGCCGACTACGCCGAAGTCGCCCTTGTCTTCGGCAAAGACGAAACACCGCCGATAGAAAGC
GAACTGTTTTGGCTGCTCATCGAAAACCTCCTGCTGCCCACCCTGTCCGCATTGCAAGAGGCCGTCTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(770-987)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5CH15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

55.784

100

0.563

Multiple sequence alignment