Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DQN79_RS04595 Genome accession   NZ_LS483435
Coordinates   905748..907790 (-) Length   680 a.a.
NCBI ID   WP_111751036.1    Uniprot ID   -
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900748..912790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS04550 (NCTC11050_00860) - 900836..901525 (+) 690 WP_003769907.1 M48 family metallopeptidase -
  DQN79_RS04580 (NCTC11050_00866) pgsA 902381..902944 (-) 564 WP_003769911.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQN79_RS04585 (NCTC11050_00867) hpnC 903156..903971 (+) 816 WP_003769916.1 squalene synthase HpnC -
  DQN79_RS04590 (NCTC11050_00868) - 904045..905577 (+) 1533 WP_041961575.1 phospholipase D family protein -
  DQN79_RS04595 (NCTC11050_00869) recG 905748..907790 (-) 2043 WP_111751036.1 ATP-dependent DNA helicase RecG Machinery gene
  DQN79_RS04600 (NCTC11050_00870) tldD 908204..909649 (+) 1446 WP_003769926.1 metalloprotease TldD -
  DQN79_RS04605 (NCTC11050_00871) - 909738..910340 (-) 603 WP_003769930.1 DUF4112 domain-containing protein -
  DQN79_RS04610 (NCTC11050_00872) - 910591..911022 (-) 432 WP_003769932.1 acyl-CoA thioesterase -
  DQN79_RS12485 - 911113..911232 (+) 120 Protein_881 IS5/IS1182 family transposase -
  DQN79_RS04615 (NCTC11050_00873) - 911292..912245 (-) 954 WP_003769936.1 L,D-transpeptidase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75202.03 Da        Isoelectric Point: 6.8457

>NTDB_id=1141398 DQN79_RS04595 WP_111751036.1 905748..907790(-) (recG) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MMTPETQKQLKITDVSAKKLDKLNLNTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADDSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTA
AALGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQAAVMAPTEI
LAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRL
ALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLI
EESETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLYLLEQAREIAPMLIEQNPEIVEAHLARWLASREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=1141398 DQN79_RS04595 WP_111751036.1 905748..907790(-) (recG) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGATGACGCCCGAAACCCAGAAACAGCTCAAAATCACCGACGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCAACAC
CGCATGGGATTTGGTTTTGCATTTGCCGCTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCG
GCGTGCCGTGTCAGGTCGAGGGCGAGGTCATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTTATCGTCCAAATC
GCCGACGATTCCGGCAGCGTCCTTTTTCTGCGCTTTATCCATTTTTACGCCAGCCATCAGAAACAGATGGCGGCCGGCAA
ACGCATCCGCGCCGTGGGCGAAATCAAACACGGGTTTTACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGA
GCAGCGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGCTTGAACCAGCCCACTTTGCGCCGCATCATT
CAGACGGCGTTGGACGTTACGCCGCTGCATGACACGCTGCCCGATGCCTTATTGGGCCGTCTGAAACTGCCGCACCTCGC
CGAAAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGTTTCACCATCCACCAGCTTTCCGACGGCGCGCTGCCTGCATGGC
AGCGGCTCAAATTCGACGAACTTTTGGCGCAACAGCTTTCCATGCGCTTGGCGCGGCAGAAGCGCGTTAGCGGTACGGCG
GCGGCATTGGGTGGCGACGGCACATTGACCCAAGCCCTGCGCCATGCCTTGCCGTTTGCCCTGACCGATGCCCAAGAAAG
GGTCGTGTCCGAAATCCGCCGCGACATGGCGCAAACCCATCCCATGCACCGCCTGCTTCAAGGCGATGTCGGCAGCGGCA
AAACCATCGTCGCCGCCTTGTCCGCGCTGACCGCCATCGAATCGGGCGCGCAGGCGGCCGTGATGGCGCCGACCGAAATC
CTTGCCGAACAGCATTTCATCAAGTTCAAACAATGGCTTGAGCCGTTAGGACTCGAAGTCGTCTGGCTTTCCGGCAGCCA
GCGCAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGTACCGTCAAAATCGCCGTCGGCACGCACGCCCTGT
TTTCAGACGACGTCGAGTTCCAAAATCTGGGCTTGGTGATTGTGGACGAGCAACACCGCTTCGGCGTCGCCCAACGCCTC
GCCCTCAAAAACAAAGGGCGTGACGTCCACCAGCTGATGATGTCCGCCACCCCCATCCCGCGCACGCTCGCCATGAGTTT
CTTCGCCGACTTGGACGTGTCCGTCATCGACGAATTGCCGCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATATTGGGTCTGCCCGCTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTAGAGCAGCTTCAGGCGGCATTGCCCGAACTCAACAT
CGGCTTGGTACACGGGCGCATGAAGGCCGCCGAAAAAGCCGAAGTCATGGCGGAGTTTGCCGCAGGCCGTCTGAACGTCT
TGGTCGCCACCACCGTTATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTGCACCAATTACGCGGGCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCCGA
ACCCTTGAGCGAACTCGCTAAAGCGCGGCTGAAAGTGATTTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGTCAAAGCGGCGTCCCCATGCTGCGTTTCGCCAACCTCGAAGAA
GACCTGTACCTCTTGGAACAAGCGCGCGAAATCGCCCCCATGCTGATTGAGCAAAACCCCGAAATCGTCGAAGCGCATCT
GGCAAGATGGCTTGCCAGCAGGGAAGGGTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(468-575)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

RecG wedge domain (RecG_wedge)

(15-164)

DEAD/DEAH box helicase (DEAD)

(262-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.382

100

0.934

Multiple sequence alignment