Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DQN79_RS03345 Genome accession   NZ_LS483435
Coordinates   657192..658694 (-) Length   500 a.a.
NCBI ID   WP_003771880.1    Uniprot ID   -
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 652192..663694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS03320 (NCTC11050_00626) - 653556..653921 (+) 366 WP_003771327.1 hypothetical protein -
  DQN79_RS03325 (NCTC11050_00627) - 654018..654368 (+) 351 WP_040666144.1 helix-turn-helix domain-containing protein -
  DQN79_RS03330 (NCTC11050_00628) - 654365..655168 (+) 804 WP_003773414.1 IS3 family transposase -
  DQN79_RS03335 (NCTC11050_00629) - 655245..655697 (-) 453 WP_003771885.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  DQN79_RS03340 (NCTC11050_00630) dacB 655707..657119 (-) 1413 WP_003771882.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  DQN79_RS03345 (NCTC11050_00631) pilA 657192..658694 (-) 1503 WP_003771880.1 signal recognition particle-docking protein FtsY Machinery gene
  DQN79_RS03350 (NCTC11050_00632) - 658711..658929 (-) 219 WP_003771878.1 hypothetical protein -
  DQN79_RS03355 (NCTC11050_00633) - 659085..660446 (+) 1362 WP_003771877.1 M16 family metallopeptidase -
  DQN79_RS03360 (NCTC11050_00634) - 660443..661750 (+) 1308 WP_041961241.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53834.83 Da        Isoelectric Point: 4.2394

>NTDB_id=1141395 DQN79_RS03345 WP_003771880.1 657192..658694(-) (pilA) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MALFDFLFKRKKDEPQPAAEDRPSENPPAEEAAESAETPEPPSEPAPPAEPSPQADTAEADTAEGEPLSEREAFLRDIRN
ADRSSLLSHPAQTGTAADAENSQPAAPAEAPAPTQEPETPSNGLHPENEDETTEEPAEKESVEEKEQPSETQPAEEQPTE
MRHTEEQPEQEPAAEKAQAVEDRPAEEQAAEEQPAETGGWTARLKQGLSKSRDKMAKSLAGVFGGGKIDEDLYEELETVL
LTSDMGIEATEHLMDEVRRRVSLKGLSDGRELRQALKEAVYDLLSPLEKPLEIPDNGQPFVIMMAGINGAGKTTSIGKLA
KYFQSQGKSVILAAGDTFRAAAREQLQEWGERNGVTVISQVKGDSAAVCFDAVEAAKARKIDIVLADTAGRLPTQLHLME
EIKKVKRVLQKSMPDAPHEIIVVLDANIGQNAVGQVAAFDDTLGVTGLIVTKLDGTAKGGVLAALASSRPIPVRYIGVGE
KIDDLRPFDARAFVDALIDN

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1141395 DQN79_RS03345 WP_003771880.1 657192..658694(-) (pilA) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGGCCTTATTCGATTTCCTATTCAAACGGAAAAAAGACGAACCGCAGCCTGCCGCAGAAGACAGGCCGTCTGAAAACCC
GCCCGCCGAAGAAGCGGCGGAAAGCGCGGAAACCCCCGAACCGCCTTCAGAACCCGCCCCGCCTGCCGAACCGTCGCCAC
AAGCAGATACTGCCGAAGCCGACACGGCGGAGGGCGAACCCCTCAGCGAACGCGAAGCCTTCCTGCGCGACATCCGCAAC
GCCGACCGCAGCAGCCTGCTCAGCCATCCGGCACAGACCGGCACGGCGGCGGACGCGGAAAACAGCCAACCCGCCGCCCC
GGCCGAAGCACCTGCCCCCACGCAAGAGCCGGAAACGCCTTCAAACGGCCTCCATCCCGAAAATGAAGACGAAACGACGG
AAGAACCGGCAGAAAAAGAATCCGTAGAAGAAAAAGAACAGCCTTCGGAAACACAACCCGCCGAGGAACAGCCAACCGAA
ATGCGGCATACAGAAGAGCAGCCTGAACAAGAACCGGCGGCAGAAAAAGCACAAGCCGTTGAAGACCGGCCTGCAGAAGA
ACAAGCTGCCGAAGAGCAGCCCGCAGAAACAGGCGGCTGGACGGCGCGTCTGAAACAAGGCCTGAGCAAATCGCGCGACA
AAATGGCCAAATCGCTGGCCGGCGTATTCGGCGGCGGCAAAATCGACGAAGACCTGTACGAAGAACTCGAAACCGTGCTG
CTCACCAGCGACATGGGCATCGAAGCCACCGAACACCTGATGGACGAAGTCCGCCGCCGCGTTTCCCTGAAAGGCCTTTC
AGACGGCCGCGAACTGCGCCAGGCACTGAAAGAAGCCGTTTACGACCTGCTCTCCCCGCTGGAAAAACCGCTGGAAATCC
CCGACAACGGCCAACCCTTCGTCATCATGATGGCGGGCATCAACGGCGCGGGTAAAACCACCTCCATCGGCAAACTGGCC
AAATACTTCCAATCGCAGGGCAAATCCGTGATACTCGCGGCAGGCGACACCTTCCGCGCCGCCGCGCGCGAACAGCTCCA
AGAATGGGGCGAACGCAACGGCGTAACCGTCATCTCCCAAGTCAAAGGCGATTCCGCCGCCGTCTGCTTCGATGCCGTCG
AAGCGGCCAAAGCGCGCAAAATCGACATCGTGCTGGCCGACACCGCCGGCCGCCTGCCCACCCAGCTCCACCTGATGGAA
GAAATCAAAAAAGTGAAGCGCGTACTGCAAAAATCCATGCCCGACGCGCCGCACGAAATCATCGTCGTCCTCGATGCCAA
CATCGGCCAAAACGCAGTCGGCCAAGTGGCGGCCTTCGACGACACCCTGGGCGTAACCGGCCTCATCGTCACCAAACTCG
ACGGCACGGCCAAAGGCGGCGTATTGGCCGCACTCGCCTCCAGCCGGCCGATACCCGTGCGCTACATCGGCGTGGGCGAA
AAAATCGACGACCTGCGCCCGTTTGACGCACGCGCCTTCGTCGATGCACTGATAGACAACTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(214-279)

SRP54-type protein, GTPase domain (SRP54)

(299-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

85.05

60.2

0.512

Multiple sequence alignment