Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   DQN28_RS06515 Genome accession   NZ_LS483430
Coordinates   1287061..1287786 (-) Length   241 a.a.
NCBI ID   WP_002983379.1    Uniprot ID   A0A4U7HHL6
Organism   Streptococcus pyogenes strain NCTC12044     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1282061..1292786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN28_RS06480 (NCTC12044_01290) rnpM 1282095..1282391 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQN28_RS06485 (NCTC12044_01291) nusA 1282407..1283564 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  DQN28_RS06490 (NCTC12044_01292) rimP 1283739..1284275 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQN28_RS06500 (NCTC12044_01294) trmB 1284534..1285169 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQN28_RS06505 (NCTC12044_01295) ccrZ 1285169..1285960 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQN28_RS06510 (NCTC12044_01296) - 1286024..1287058 (-) 1035 WP_002988663.1 ABC transporter permease -
  DQN28_RS06515 (NCTC12044_01297) pptA 1287061..1287786 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQN28_RS06520 (NCTC12044_01298) - 1287858..1288277 (+) 420 WP_002983376.1 HIT family protein -
  DQN28_RS06525 (NCTC12044_01299) - 1288274..1288630 (+) 357 WP_002988657.1 hypothetical protein -
  DQN28_RS06530 (NCTC12044_01300) brpA 1288741..1290024 (-) 1284 WP_002994335.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQN28_RS06535 (NCTC12044_01301) - 1290033..1290557 (-) 525 WP_002994338.1 GNAT family N-acetyltransferase -
  DQN28_RS06540 (NCTC12044_01302) tsaE 1290532..1290993 (-) 462 WP_111686335.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQN28_RS06545 (NCTC12044_01303) - 1291147..1292607 (-) 1461 WP_111686336.1 NCS2 family permease -

Sequence


Protein


Download         Length: 241 a.a.        Molecular weight: 26678.75 Da        Isoelectric Point: 4.5624

>NTDB_id=1141279 DQN28_RS06515 WP_002983379.1 1287061..1287786(-) (pptA) [Streptococcus pyogenes strain NCTC12044]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1141279 DQN28_RS06515 WP_002983379.1 1287061..1287786(-) (pptA) [Streptococcus pyogenes strain NCTC12044]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCCTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains


Predicted by InterproScan.

(17-160)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4U7HHL6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

99.17

0.722

  pptA Streptococcus thermophilus LMD-9

71.967

99.17

0.714


Multiple sequence alignment