Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOKI102_RS00420 Genome accession   NZ_CP006820
Coordinates   88240..89553 (+) Length   437 a.a.
NCBI ID   WP_025275484.1    Uniprot ID   -
Organism   Helicobacter pylori oki102     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 83240..94553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI102_RS00400 (HPOKI102_00435) crdR 83554..84195 (+) 642 WP_025275480.1 copper response regulator transcription factor CrdR -
  HPOKI102_RS00405 (HPOKI102_00440) crdS 84161..85363 (+) 1203 WP_080276177.1 copper-sensing histidine kinase CrdS -
  HPOKI102_RS00410 (HPOKI102_00445) - 85366..86766 (+) 1401 WP_025275482.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOKI102_RS00415 (HPOKI102_00450) - 86777..88243 (+) 1467 WP_025275483.1 replicative DNA helicase -
  HPOKI102_RS00420 (HPOKI102_00455) comEC/comE3 88240..89553 (+) 1314 WP_025275484.1 ComEC/Rec2 family competence protein Machinery gene
  HPOKI102_RS00425 (HPOKI102_00460) mqnP 89624..90466 (+) 843 WP_235169399.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOKI102_RS00430 (HPOKI102_00465) - 90459..90953 (+) 495 WP_025275486.1 hypothetical protein -
  HPOKI102_RS00435 (HPOKI102_00470) - 90966..91472 (+) 507 WP_025275487.1 DUF6115 domain-containing protein -
  HPOKI102_RS00440 (HPOKI102_00475) - 91466..92269 (+) 804 WP_025275488.1 phosphatidylserine decarboxylase -
  HPOKI102_RS00445 (HPOKI102_00480) nadA 92259..93263 (+) 1005 WP_025275489.1 quinolinate synthase NadA -
  HPOKI102_RS00450 (HPOKI102_00485) nadC 93263..94084 (+) 822 WP_025275490.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50313.27 Da        Isoelectric Point: 9.8514

>NTDB_id=114126 HPOKI102_RS00420 WP_025275484.1 88240..89553(+) (comEC/comE3) [Helicobacter pylori oki102]
MKDKTFQGAFELLSTPKEYLVCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKQDFKSHLRRFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTENFFKTSSFLMRSFQVISLS
ALIFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHLLNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=114126 HPOKI102_RS00420 WP_025275484.1 88240..89553(+) (comEC/comE3) [Helicobacter pylori oki102]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACCTGGTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
TGCGCCGTTTCATTGACAGCGCTCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAATGCACTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTATATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACGGAAAATTTTTTTAAAACCTCTTCTTTTTTGATGCGATCGTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCACC
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.652

100

0.957

Multiple sequence alignment