Detailed information NTG1141256

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQN28_RS01400
• Genome accession: NZ_LS483430
• Coordinates: 255245..256168 (+)
• Length: 307 a.a.
• NCBI ID: WP_111686167.1
• Uniprot ID: -
• Organism: Streptococcus pyogenes strain NCTC12044
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 250245..261168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN28_RS01385 (NCTC12044_00274)	amiC	251745..253247 (+)	1503	WP_011017334.1	ABC transporter permease	Regulator
DQN28_RS01390 (NCTC12044_00275)	amiD	253247..254173 (+)	927	WP_002986004.1	oligopeptide ABC transporter permease OppC	Regulator
DQN28_RS01395 (NCTC12044_00276)	amiE	254182..255252 (+)	1071	WP_002986002.1	ABC transporter ATP-binding protein	Regulator
DQN28_RS01400 (NCTC12044_00277)	amiF	255245..256168 (+)	924	WP_111686167.1	ABC transporter ATP-binding protein	Regulator
DQN28_RS09300	-	256206..256289 (-)	84	Protein_224	IS3 family transposase	-
DQN28_RS08990	-	256316..256561 (-)	246	WP_197712548.1	transposase	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34745.93 Da
• Isoelectric Point: 6.5113

>NTDB_id=1141256 DQN28_RS01400 WP_111686167.1 255245..256168(+) (amiF) [Streptococcus pyogenes strain NCTC12044]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1141256 DQN28_RS01400 WP_111686167.1 255245..256168(+) (amiF) [Streptococcus pyogenes strain NCTC12044]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGACCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAGCCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTCTCAAACGGATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATCATCCAGACCAACATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	82.353	99.674	0.821
amiF	Streptococcus thermophilus LMD-9	82.026	99.674	0.818
amiF	Streptococcus salivarius strain HSISS4	82.026	99.674	0.818