Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DQN49_RS09740 Genome accession   NZ_LS483429
Coordinates   1904579..1906945 (-) Length   788 a.a.
NCBI ID   WP_006995703.1    Uniprot ID   -
Organism   Haemophilus aegyptius strain NCTC8502     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1899579..1911945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN49_RS09725 (NCTC8502_01986) kdsB 1900869..1901633 (-) 765 WP_006995706.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DQN49_RS09730 (NCTC8502_01987) lpxK 1901704..1902702 (-) 999 WP_006995705.1 tetraacyldisaccharide 4'-kinase -
  DQN49_RS09735 (NCTC8502_01988) msbA 1902775..1904538 (-) 1764 WP_006995704.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DQN49_RS09740 (NCTC8502_01989) rec2 1904579..1906945 (-) 2367 WP_006995703.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQN49_RS09745 (NCTC8502_01990) dksA 1907204..1907641 (+) 438 WP_005630220.1 RNA polymerase-binding protein DksA -
  DQN49_RS09750 (NCTC8502_01991) pcnB 1907889..1909247 (+) 1359 WP_013527232.1 polynucleotide adenylyltransferase PcnB -
  DQN49_RS09755 (NCTC8502_01992) folK 1909256..1909738 (+) 483 WP_006995701.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DQN49_RS09760 (NCTC8502_01993) tsaE 1909814..1910290 (+) 477 WP_005693857.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQN49_RS09765 (NCTC8502_01994) - 1910298..1911596 (+) 1299 WP_005649777.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89752.53 Da        Isoelectric Point: 10.1304

>NTDB_id=1141238 DQN49_RS09740 WP_006995703.1 1904579..1906945(-) (rec2) [Haemophilus aegyptius strain NCTC8502]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPLLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAFGTVKSAVKIANVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKTIWSIYQHTNTAHLIAISGLHIGLAM
GIGFFFSRVVQIFFPTRFIHPYFPLVFGTLFALIYAYLAGFSVPTFRAISALVFVLFVQIMRRHYSSIQLFTLIVGFLLF
CDPLMSLSVSFWLSCGAVGCLIVWYRYVPFSLFQWGNSPFSQKVRWILSLFHLQLGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFFLVPLILFAVFTNGAMFSWQLANKLAEGITWLISLFQGNWFNVSFNLALVLTALCGGIFMLIIWRIYREAE
VLSLTWKIKRPRFFTLNLSKPLLKNERINVLRCFFGIMSLCFMILLFKQLSKPTWQLDTLDVGQGLATLIVKNGRGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTMLKNYPKVELITPSQKNYGENYRTFCTAGRDWHWQG
LHFQILSPHTVVTRADNPHSCVILVDDGKHRVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDMA
IISSGRWNPWKLPHYSVIERLQRYKSAVENTAVSGQVRVNFFQDRLDIQQARTEFSPWYARVIGLSKK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=1141238 DQN49_RS09740 WP_006995703.1 1904579..1906945(-) (rec2) [Haemophilus aegyptius strain NCTC8502]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCTATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTCGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAG
GGGATTACCGCTTTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGAATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAACAAACGGAAGGGTTATCACTACAAGGTTTATTGATTGCCTTAGCCTTTGGCGAACGGGCTTGGTTAGATA
AAACTATTTGGTCAATTTACCAACACACTAATACTGCTCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGGATTGGTTTTTTCTTCAGTCGAGTTGTACAAATATTTTTTCCTACTCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
CGGTACTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TTGTTTTATTTGTTCAAATAATGAGGCGACATTATTCGTCCATTCAGCTTTTTACGTTGATTGTTGGATTCTTGCTTTTC
TGCGATCCATTAATGTCGCTTTCTGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCGTTTGGTATCGTTA
TGTGCCTTTTTCTCTTTTTCAATGGGGAAATAGCCCCTTTTCCCAAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTGGGGTTATTGCTCTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATGGCTGTTCCAATTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCCGTTTTTACCAACGGCGCAATGTTTTC
TTGGCAACTTGCAAATAAGCTAGCCGAAGGAATTACTTGGTTAATTTCTCTTTTCCAAGGAAATTGGTTCAATGTTTCAT
TTAATTTAGCGTTGGTTTTAACCGCACTTTGTGGCGGAATCTTTATGTTAATTATTTGGCGTATTTATCGAGAAGCAGAG
GTTTTATCATTAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCCTTGCTAAAAAATGAACG
AATCAACGTTTTGCGATGTTTTTTCGGCATTATGTCGCTGTGTTTTATGATTTTGTTGTTCAAGCAACTAAGCAAGCCAA
CTTGGCAATTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAGAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTGCAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGGGCATCAACAATGTTAAAAAACTATCCAAAAGTGGAAT
TGATTACTCCTTCACAAAAAAATTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGACGTGATTGGCATTGGCAAGGG
TTACATTTTCAAATACTTTCTCCTCACACTGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTAATTTTAGTCGATGA
TGGAAAGCATCGAGTTTTGCTAACCGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGCAAAATTG
ATGTGTTACAAGTGGGGCATCATGGGAGCAAAACATCGACAAGTGAATACTTACTTTCTCAGGTTCGACCAGATATGGCG
ATTATATCTAGTGGACGTTGGAATCCGTGGAAATTACCCCATTATTCGGTGATAGAGAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCAGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGATATCCAACAAGCACGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGAAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-723)

Domain of unknown function (DUF4131) (DUF4131)

(28-171)

Competence protein (Competence)

(204-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

91.624

100

0.916

Multiple sequence alignment