Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DQN52_RS02530 Genome accession   NZ_LS483426
Coordinates   468106..469680 (+) Length   524 a.a.
NCBI ID   WP_071461635.1    Uniprot ID   A0AAX2J1M4
Organism   Kingella kingae strain NCTC10529     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 463106..474680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS02515 (NCTC10529_00492) - 464922..466349 (+) 1428 WP_003788049.1 HlyD family type I secretion periplasmic adaptor subunit -
  DQN52_RS02520 (NCTC10529_00493) - 466639..467127 (+) 489 WP_003792114.1 toxin-activating lysine-acyltransferase -
  DQN52_RS02525 (NCTC10529_00494) - 467057..467821 (-) 765 WP_197712487.1 DDE-type integrase/transposase/recombinase -
  DQN52_RS02530 (NCTC10529_00495) pilA 468106..469680 (+) 1575 WP_071461635.1 signal recognition particle-docking protein FtsY Machinery gene
  DQN52_RS02535 (NCTC10529_00496) lpxB 469740..470891 (-) 1152 WP_003788044.1 lipid-A-disaccharide synthase -
  DQN52_RS10890 - 470912..471076 (+) 165 WP_155114354.1 hypothetical protein -
  DQN52_RS02540 (NCTC10529_00497) - 471073..471405 (-) 333 WP_228368985.1 LysE/ArgO family amino acid transporter -
  DQN52_RS02545 (NCTC10529_00498) ubiM 471650..472834 (-) 1185 WP_174259096.1 5-demethoxyubiquinol-8 5-hydroxylase UbiM -
  DQN52_RS02550 (NCTC10529_00499) - 472890..473216 (+) 327 WP_223877612.1 hypothetical protein -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 56622.60 Da        Isoelectric Point: 4.1779

>NTDB_id=1141179 DQN52_RS02530 WP_071461635.1 468106..469680(+) (pilA) [Kingella kingae strain NCTC10529]
MFNLFNKLFNRKAETPPNTEKEPEQVQAASAPETAPAVANENVQAALSAETEVAQENTADEVPQAEAESTETAEENVQAA
LNAETEVAQENTVEAEPMRHSWATPVVEEVKETVQSAEQWAEDMAHAVAEKVDELEMRAEILAEETSESVSHWAQGMAHA
VEEKLDELEMRAEILVDEAKEAVVESVQTLEHALEGENALPEPELLPEEPVAPEAEESLGWTARLARGLSKSRNQMAKSL
AGVFGGGKIDEDLYEELETVLITSDMGIEATEQLMNEVRNRVSLKGLKDGAELRSALKDAIYDLLKPLDQPLVLPDNGQP
FVIMMAGINGAGKTTSIGKLAKYFQSQGKSVMLAAGDTFRAAAREQLQEWGARNNVTVISQEKGDSAAVCFDAVEAAKAR
KIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIMVVLDANIGQNAVNQVVAFDDALGVTGLIVTKLDGTAKG
GVLAALASSRAIPVRYIGVGESIDDLRPFNAKAFVDALLDEWSA

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=1141179 DQN52_RS02530 WP_071461635.1 468106..469680(+) (pilA) [Kingella kingae strain NCTC10529]
ATGTTTAATTTATTCAATAAACTGTTCAACCGGAAAGCCGAAACGCCGCCCAACACCGAAAAAGAACCAGAACAGGTGCA
GGCTGCTTCTGCGCCCGAAACTGCGCCTGCGGTTGCCAATGAAAATGTGCAGGCTGCTTTGAGTGCAGAAACCGAAGTCG
CGCAAGAAAACACGGCAGATGAAGTACCACAAGCTGAAGCCGAAAGCACGGAAACCGCAGAAGAAAATGTGCAGGCTGCT
TTGAACGCAGAAACCGAAGTCGCACAAGAAAATACGGTTGAAGCAGAACCCATGCGCCATAGCTGGGCAACGCCTGTGGT
GGAAGAAGTCAAAGAAACGGTGCAATCTGCCGAGCAATGGGCGGAAGACATGGCGCACGCGGTGGCAGAAAAAGTCGATG
AATTGGAAATGCGTGCCGAAATCTTGGCAGAAGAAACCAGCGAAAGCGTGAGCCATTGGGCACAAGGCATGGCACACGCG
GTAGAAGAAAAATTGGACGAGCTGGAAATGCGCGCCGAAATTTTGGTTGATGAAGCCAAAGAAGCAGTGGTGGAAAGCGT
GCAGACGTTGGAACACGCGCTGGAAGGCGAAAATGCGCTGCCCGAACCCGAATTGTTGCCCGAAGAGCCAGTCGCGCCTG
AAGCGGAAGAATCCTTGGGCTGGACGGCACGTTTGGCGCGTGGTTTGAGCAAATCGCGCAATCAAATGGCAAAGTCGTTG
GCTGGCGTGTTTGGCGGCGGCAAAATTGACGAAGATTTGTACGAAGAACTGGAAACGGTGCTGATTACCAGCGATATGGG
CATTGAAGCGACCGAACAGTTGATGAATGAAGTCCGCAATCGTGTGTCGCTCAAAGGCTTGAAAGACGGCGCGGAATTGC
GTTCGGCACTCAAAGACGCGATTTACGATTTGCTCAAACCATTGGACCAGCCGCTGGTGTTGCCCGATAATGGTCAGCCG
TTTGTGATTATGATGGCTGGCATCAATGGCGCAGGCAAAACCACGTCTATTGGCAAATTGGCGAAGTATTTTCAATCGCA
AGGCAAAAGCGTGATGTTGGCGGCGGGCGATACCTTCCGTGCGGCGGCGCGTGAGCAGTTGCAAGAATGGGGTGCGCGAA
ACAATGTTACCGTGATTTCGCAAGAAAAAGGCGACAGCGCGGCGGTGTGTTTTGATGCGGTGGAAGCGGCAAAAGCGCGT
AAAATTGACGTGGTGCTGGCGGACACGGCTGGACGCTTGCCAACGCAATTACACTTGATGGAAGAAATCAAAAAAGTGAA
GCGCGTGTTGCAAAAATCCATGCCCGATGCGCCACACGAAATCATGGTGGTGCTGGACGCGAACATCGGTCAAAACGCGG
TCAATCAAGTGGTGGCGTTTGACGATGCGTTGGGCGTAACAGGTTTGATTGTTACCAAGCTGGACGGCACGGCAAAAGGC
GGCGTGTTGGCGGCGTTGGCAAGCAGTCGTGCGATTCCTGTGCGCTATATTGGCGTGGGCGAGAGCATTGACGATTTGCG
CCCGTTCAATGCCAAAGCGTTTGTGGACGCGCTGTTGGACGAGTGGTCGGCATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(236-300)

SRP54-type protein, GTPase domain (SRP54)

(320-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

69.212

79.962

0.553

Multiple sequence alignment