Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DQO06_RS18055 Genome accession   NZ_LS483424
Coordinates   3826004..3827203 (-) Length   399 a.a.
NCBI ID   WP_041937118.1    Uniprot ID   -
Organism   Bordetella parapertussis strain NCTC10520     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3821004..3832203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO06_RS18035 (NCTC10520_03684) phnC 3821645..3822415 (+) 771 WP_010927715.1 phosphonate ABC transporter ATP-binding protein -
  DQO06_RS18040 (NCTC10520_03685) phnE 3822412..3823302 (+) 891 WP_041937119.1 phosphonate ABC transporter, permease protein PhnE -
  DQO06_RS18045 (NCTC10520_03686) phnE 3823299..3824120 (+) 822 WP_003808584.1 phosphonate ABC transporter, permease protein PhnE -
  DQO06_RS18050 - 3824359..3825957 (+) 1599 WP_010927713.1 CYTH and CHAD domain-containing protein -
  DQO06_RS18055 (NCTC10520_03688) pilA 3826004..3827203 (-) 1200 WP_041937118.1 signal recognition particle-docking protein FtsY Machinery gene
  DQO06_RS18060 (NCTC10520_03689) rsmD 3827279..3827899 (+) 621 WP_003808577.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DQO06_RS18065 (NCTC10520_03690) coaD 3827920..3828429 (+) 510 WP_003808574.1 pantetheine-phosphate adenylyltransferase -
  DQO06_RS18070 (NCTC10520_03691) - 3828484..3828735 (+) 252 WP_003808570.1 YfhL family 4Fe-4S dicluster ferredoxin -
  DQO06_RS18075 (NCTC10520_03692) - 3828732..3829949 (+) 1218 WP_003808568.1 benzoate/H(+) symporter BenE family transporter -
  DQO06_RS18080 (NCTC10520_03693) - 3829957..3830343 (-) 387 WP_010927711.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 41695.66 Da        Isoelectric Point: 5.2904

>NTDB_id=1141116 DQO06_RS18055 WP_041937118.1 3826004..3827203(-) (pilA) [Bordetella parapertussis strain NCTC10520]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAESQPP
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLWPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=1141116 DQO06_RS18055 WP_041937118.1 3826004..3827203(-) (pilA) [Bordetella parapertussis strain NCTC10520]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGTCGCAGCCACCG
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGTGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(195-397)

SRP54-type protein, helical bundle domain (SRP54_N)

(115-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.7

100

0.516

Multiple sequence alignment