Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQN31_RS01450 Genome accession   NZ_LS483421
Coordinates   264819..265745 (+) Length   308 a.a.
NCBI ID   WP_014407303.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10877     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 259819..270745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN31_RS01440 (NCTC10877_00285) amiA 261282..263252 (+) 1971 WP_014407301.1 peptide ABC transporter substrate-binding protein Regulator
  DQN31_RS01445 (NCTC10877_00286) amiC 263317..264819 (+) 1503 WP_014407302.1 ABC transporter permease Regulator
  DQN31_RS01450 (NCTC10877_00287) amiD 264819..265745 (+) 927 WP_014407303.1 oligopeptide ABC transporter permease OppC Regulator
  DQN31_RS01455 (NCTC10877_00288) amiE 265754..266824 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  DQN31_RS01460 (NCTC10877_00289) amiF 266817..267740 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQN31_RS09315 - 267778..267867 (-) 90 WP_110002794.1 IS3 family transposase -
  DQN31_RS09320 - 267997..268313 (-) 317 Protein_235 IS3 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34834.75 Da        Isoelectric Point: 8.5670

>NTDB_id=1141042 DQN31_RS01450 WP_014407303.1 264819..265745(+) (amiD) [Streptococcus pyogenes strain NCTC10877]
MESIDKSKFRFVERDSEASEAIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1141042 DQN31_RS01450 WP_014407303.1 264819..265745(+) (amiD) [Streptococcus pyogenes strain NCTC10877]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGCGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCGAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment