Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   DQM62_RS08360 Genome accession   NZ_LS483418
Coordinates   1653933..1655723 (-) Length   596 a.a.
NCBI ID   WP_014917310.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10234     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648933..1660723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM62_RS08340 (NCTC10234_01640) - 1649731..1650633 (-) 903 WP_002938141.1 ABC transporter permease -
  DQM62_RS08345 (NCTC10234_01641) opp4B 1650647..1651603 (-) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  DQM62_RS08350 (NCTC10234_01642) - 1651605..1652546 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  DQM62_RS08355 (NCTC10234_01643) - 1652549..1653547 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  DQM62_RS08360 (NCTC10234_01644) oppA 1653933..1655723 (-) 1791 WP_014917310.1 oligopeptide ABC transporter substrate-binding protein Regulator
  DQM62_RS08365 (NCTC10234_01645) pbp3 1655936..1657177 (+) 1242 WP_012775332.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM62_RS08370 (NCTC10234_01646) sufB 1657430..1658845 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  DQM62_RS08375 (NCTC10234_01647) sufU 1659195..1659635 (-) 441 WP_012775691.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65693.75 Da        Isoelectric Point: 4.6364

>NTDB_id=1140968 DQM62_RS08360 WP_014917310.1 1653933..1655723(-) (oppA) [Streptococcus suis strain NCTC10234]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGERKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLESSYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRIVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESEKITA
VNKRVKSYDTKYGSASGTGLAYEGIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=1140968 DQM62_RS08360 WP_014917310.1 1653933..1655723(-) (oppA) [Streptococcus suis strain NCTC10234]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCGGCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCTTGGGTATCTCCTACAACTTCATCAGGTCTTTTAATTGATGAGTTGACTGAGAATACTACTGATTCAACA
TTTGGTGGTATGGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTAAAAGGCAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCGATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAT
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTAACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGGCCGTGGAAG
ATTAAGGAAATCGTCAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATCGCAGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATTTTGGTAAATATGACGAAGCAGCTGGTAAGAACGTTATGGATGAAAATGCCAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTAAGTCATTATACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGTGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTATAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGGCCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACGTTTGAGTCAGAAAAAATTACTGCT
GTTAATAAACGTGTGAAAAGCTATGATACAAAATACGGCTCAGCTTCGGGTACAGGTCTTGCTTATGAGGGTATCGAATT
GACAGCTGATAAGGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

99.664

100

0.997

Multiple sequence alignment