Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM62_RS06020 Genome accession   NZ_LS483418
Coordinates   1198100..1198903 (-) Length   267 a.a.
NCBI ID   WP_012027300.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10234     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193100..1203903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM62_RS05995 (NCTC10234_01179) recR 1193374..1193970 (-) 597 WP_012027296.1 recombination mediator RecR -
  DQM62_RS06000 (NCTC10234_01180) pbp2b 1193979..1196054 (-) 2076 WP_012775443.1 penicillin-binding protein PBP2B -
  DQM62_RS06005 (NCTC10234_01181) - 1196131..1196880 (-) 750 WP_012027298.1 ATP-binding cassette domain-containing protein -
  DQM62_RS06010 (NCTC10234_01182) - 1197043..1197585 (-) 543 WP_012027299.1 ATP-binding cassette domain-containing protein -
  DQM62_RS06015 (NCTC10234_01183) - 1197572..1197844 (-) 273 WP_014735627.1 hypothetical protein -
  DQM62_RS06020 (NCTC10234_01184) vicX 1198100..1198903 (-) 804 WP_012027300.1 MBL fold metallo-hydrolase Regulator
  DQM62_RS06025 (NCTC10234_01185) micB 1198910..1200259 (-) 1350 WP_012027301.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM62_RS06030 (NCTC10234_01186) micA 1200252..1200956 (-) 705 WP_004298854.1 response regulator YycF Regulator
  DQM62_RS06035 (NCTC10234_01187) - 1201150..1201911 (+) 762 WP_012027304.1 amino acid ABC transporter ATP-binding protein -
  DQM62_RS06040 (NCTC10234_01188) - 1201922..1202761 (+) 840 WP_012027305.1 transporter substrate-binding domain-containing protein -
  DQM62_RS06045 (NCTC10234_01189) - 1202776..1203474 (+) 699 WP_012028333.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29643.75 Da        Isoelectric Point: 5.7755

>NTDB_id=1140958 DQM62_RS06020 WP_012027300.1 1198100..1198903(-) (vicX) [Streptococcus suis strain NCTC10234]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1140958 DQM62_RS06020 WP_012027300.1 1198100..1198903(-) (vicX) [Streptococcus suis strain NCTC10234]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGCCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCGCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCATCTTTGTAATGAAGATGGAGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment